protocols::denovo_design::components::DivideAndConqueror Class Reference

Splits a denovo structure into pieces, and devises a strategy for folding the structure piece-by-piece. More...

#include <DivideAndConqueror.hh>

Inheritance diagram for protocols::denovo_design::components::DivideAndConqueror:

Public Member Functions
	DivideAndConqueror ()
	~DivideAndConqueror () override
DivideAndConquerorOP	clone () const
BuildPhases	divide_and_conquer (StructureData const &sd) const
void	set_start_segments (SegmentNameSet const &start_seg_names)
void	set_stop_segments (SegmentNameSet const &stop_seg_names)

Private Member Functions
FoldingSolutions	compute_all_units (StructureData const &sd, SegmentNameSet const &paired_segments, SegmentNameList::const_iterator start_seg) const
	compute all possible segments More...
FoldingSolutions	all_permutations (StructureSlices const &segments, StructureSlices::const_iterator chosen_item) const
FoldingSolutions::const_iterator	select_best_solution (utility::vector1< FoldingSolutions::const_iterator > const &valid) const

Private Attributes
SegmentNameSet	start_segments_
SegmentNameSet	stop_segments_

Detailed Description

Splits a denovo structure into pieces, and devises a strategy for folding the structure piece-by-piece.

Constructor & Destructor Documentation

protocols::denovo_design::components::DivideAndConqueror::DivideAndConqueror

(

)

protocols::denovo_design::components::DivideAndConqueror::~DivideAndConqueror ( )

overridedefault

Member Function Documentation

FoldingSolutions protocols::denovo_design::components::DivideAndConqueror::all_permutations ( StructureSlices const &  segments, StructureSlices::const_iterator  chosen_item  ) const

private

References protocols::stepwise::modeler::slice(), and protocols::hybridization::t.

Referenced by divide_and_conquer().

DivideAndConquerorOP protocols::denovo_design::components::DivideAndConqueror::clone

(

)

const

FoldingSolutions protocols::denovo_design::components::DivideAndConqueror::compute_all_units ( StructureData const &  sd, SegmentNameSet const &  paired_segments, SegmentNameList::const_iterator  start_seg  ) const

private

compute all possible segments

compute all possible slices

References protocols::denovo_design::components::StructureData::segments_end(), protocols::stepwise::modeler::slice(), and protocols::TR().

Referenced by divide_and_conquer().

BuildPhases protocols::denovo_design::components::DivideAndConqueror::divide_and_conquer

(

StructureData const &

sd

)

const

References all_permutations(), compute_all_units(), protocols::denovo_design::components::SegmentPairSet::segment_name_set(), protocols::denovo_design::components::StructureData::segments_begin(), protocols::denovo_design::components::StructureData::segments_end(), select_best_solution(), start_segments_, stop_segments_, and protocols::TR().

Referenced by protocols::denovo_design::movers::FoldArchitectMover::apply().

FoldingSolutions::const_iterator protocols::denovo_design::components::DivideAndConqueror::select_best_solution ( utility::vector1< FoldingSolutions::const_iterator > const &  valid ) const

private

Referenced by divide_and_conquer().

void protocols::denovo_design::components::DivideAndConqueror::set_start_segments

(

SegmentNameSet const &

start_seg_names

)

References start_segments_.

Referenced by protocols::denovo_design::movers::FoldArchitectMover::apply().

void protocols::denovo_design::components::DivideAndConqueror::set_stop_segments

(

SegmentNameSet const &

stop_seg_names

)

References stop_segments_.

Referenced by protocols::denovo_design::movers::FoldArchitectMover::apply().

Member Data Documentation

SegmentNameSet protocols::denovo_design::components::DivideAndConqueror::start_segments_

private

Referenced by divide_and_conquer(), and set_start_segments().

SegmentNameSet protocols::denovo_design::components::DivideAndConqueror::stop_segments_

private

Referenced by divide_and_conquer(), and set_stop_segments().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/components/DivideAndConqueror.hh
• src/protocols/denovo_design/components/DivideAndConqueror.cc