protocols::flexpep_docking::FlexPepDockingAbInitio Member List

This is the complete list of members for protocols::flexpep_docking::FlexPepDockingAbInitio, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::flexpep_docking::FlexPepDockingAbInitio	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
convertPSERtoASP(core::pose::Pose &pose, std::set< int > &pSer_positions)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
convertPSERtoGLU(core::pose::Pose &pose, std::set< int > &pSer_positions)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
create()	protocols::moves::Mover	virtual
flags_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
FlexPepDockingAbInitio(FlexPepDockingFlags const &flags_in, core::scoring::ScoreFunctionOP scorefxn_in, core::kinematics::MoveMapOP movemap_in, core::Size const rb_jump_in=1)	protocols::flexpep_docking::FlexPepDockingAbInitio
fragset3mer_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
fragset5mer_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
fragset9mer_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::flexpep_docking::FlexPepDockingAbInitio	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_relax_mover_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
loopclosure_monte_carlo(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
mc_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
minimizer_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
movemap_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
rb_jump_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
restorePSER(core::pose::Pose &pose, std::set< int > const &pSer_positions)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
rigidbody_monte_carlo(core::pose::Pose &pose, const int cycles, const float trans_magnitude, const float rot_magnitude, core::Real &acceptance_rate)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
scorefxn_	protocols::flexpep_docking::FlexPepDockingAbInitio	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_for_apply(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
to_allatom(core::pose::Pose &pose, core::pose::Pose &referencePose) const	protocols::flexpep_docking::FlexPepDockingAbInitio	private
to_centroid(core::pose::Pose &pose) const	protocols::flexpep_docking::FlexPepDockingAbInitio	private
torsions_monte_carlo(core::pose::Pose &pose, const int cycles, core::Real &acceptance_rate)	protocols::flexpep_docking::FlexPepDockingAbInitio	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~FlexPepDockingAbInitio() override	protocols::flexpep_docking::FlexPepDockingAbInitio