protocols::rna::AlignmentEnergy Member List

This is the complete list of members for protocols::rna::AlignmentEnergy, including all inherited members.

align_pose(core::pose::PoseOP const &align_pose)	protocols::rna::AlignmentEnergy
align_pose_	protocols::rna::AlignmentEnergy	private
AlignmentEnergy(core::scoring::methods::EnergyMethodOptions const &options)	protocols::rna::AlignmentEnergy
atomic_interaction_cutoff() const	core::scoring::methods::WholeStructureEnergy	inlinevirtual
clone() const override	protocols::rna::AlignmentEnergy	virtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
eval_atom_derivative(core::id::AtomID const &id, core::pose::Pose const &pose, core::kinematics::DomainMap const &domain_map, core::scoring::ScoreFunction const &sfxn, core::scoring::EnergyMap const &emap, core::Vector &F1, core::Vector &F2) const override	protocols::rna::AlignmentEnergy
core::scoring::methods::WholeStructureEnergy::eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override	protocols::rna::AlignmentEnergy	virtual
func_	protocols::rna::AlignmentEnergy	private
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const override	protocols::rna::AlignmentEnergy	virtual
method_type() const override	core::scoring::methods::WholeStructureEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
moving_res_list_	protocols::rna::AlignmentEnergy	private
parent typedef	protocols::rna::AlignmentEnergy	private
pose_aligner() const	protocols::rna::AlignmentEnergy	inline
pose_aligner_	protocols::rna::AlignmentEnergy	private
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::scoring::methods::EnergyMethod	virtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
rmsd_screen(core::Real const setting)	protocols::rna::AlignmentEnergy
rmsd_screen_	protocols::rna::AlignmentEnergy	private
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(core::pose::Pose &pose, core::scoring::ScoreFunction const &) const override	protocols::rna::AlignmentEnergy	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
version() const override	protocols::rna::AlignmentEnergy	virtual
WholeStructureEnergy(EnergyMethodCreatorOP)	core::scoring::methods::WholeStructureEnergy
~AlignmentEnergy() override	protocols::rna::AlignmentEnergy	inline
~WholeStructureEnergy() override	core::scoring::methods::WholeStructureEnergy	inline