| add_cap_seq(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| add_cap_seq_and_structure(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| apply(core::pose::Pose &pose) override | protocols::simple_moves::RepeatPropagationMover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::simple_moves::RepeatPropagationMover | inlinevirtual |
| copy_phi_psi_omega(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| create() | protocols::moves::Mover | virtual |
| cTerm_cap_size_ | protocols::simple_moves::RepeatPropagationMover | private |
| deal_with_length_change_scar_ | protocols::simple_moves::RepeatPropagationMover | private |
| determine_overlap(const core::pose::Pose &pose, core::pose::Pose &parent_pose, core::Size overlap_max_length, core::Size overlap_range, std::string overlap_location_pose, core::Size &start_overlap_parent, core::Size &end_overlap_parent, core::Size &start_overlap_pose, core::Size &end_overlap_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| duplicate_residues_by_type(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| extract_repeat_info_from_pose(const core::pose::Pose &pose) | protocols::simple_moves::RepeatPropagationMover | private |
| extract_repeat_info_from_pose_ | protocols::simple_moves::RepeatPropagationMover | private |
| extract_repeat_template_repeat_ | protocols::simple_moves::RepeatPropagationMover | private |
| first_res_ | protocols::simple_moves::RepeatPropagationMover | private |
| fix_ligand_residues(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| generate_overlap(core::pose::Pose &pose, core::pose::Pose &parent_pose, std::string overlap_location_pose, core::Size start_overlap_parent, core::Size end_overlap_parent, core::Size start_overlap_pose, core::Size end_overlap_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_center_of_mass(core::Real *coordinates, int number_of_atoms) | protocols::simple_moves::RepeatPropagationMover | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::simple_moves::RepeatPropagationMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| ideal_repeat_ | protocols::simple_moves::RepeatPropagationMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initial_constrained_residues(const core::pose::Pose &pose) | protocols::simple_moves::RepeatPropagationMover | private |
| initialize_repeat_pose(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_res_ | protocols::simple_moves::RepeatPropagationMover | private |
| maintain_cap_ | protocols::simple_moves::RepeatPropagationMover | private |
| maintain_cap_sequence_only_ | protocols::simple_moves::RepeatPropagationMover | private |
| maintain_ligand_ | protocols::simple_moves::RepeatPropagationMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::simple_moves::RepeatPropagationMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| nTerm_cap_size_ | protocols::simple_moves::RepeatPropagationMover | private |
| numb_repeats_ | protocols::simple_moves::RepeatPropagationMover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override | protocols::simple_moves::RepeatPropagationMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::simple_moves::RepeatPropagationMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| repeat_ligand(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| repeat_ligand_constraints(core::pose::Pose &pose, core::pose::Pose &repeat_pose) | protocols::simple_moves::RepeatPropagationMover | private |
| repeat_without_replacing_pose_ | protocols::simple_moves::RepeatPropagationMover | private |
| RepeatPropagationMover() | protocols::simple_moves::RepeatPropagationMover | |
| RepeatPropagationMover(core::Size numb_repeats) | protocols::simple_moves::RepeatPropagationMover | |
| reset_status() | protocols::moves::Mover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_repeat_seqmap(core::Size repeat_number, core::Size ligand_in_pose, core::Size ligand_in_repeat) | protocols::simple_moves::RepeatPropagationMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| start_pose_duplicate_residues_ | protocols::simple_moves::RepeatPropagationMover | private |
| start_pose_length_ | protocols::simple_moves::RepeatPropagationMover | private |
| start_pose_numb_repeats_ | protocols::simple_moves::RepeatPropagationMover | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trim_back_repeat_to_repair_scar(core::pose::Pose &pose) | protocols::simple_moves::RepeatPropagationMover | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
1.8.7