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protocols::evolution::AlignmentAAFinder Member List

This is the complete list of members for protocols::evolution::AlignmentAAFinder, including all inherited members.

alignment_file() const protocols::evolution::AlignmentAAFinderinline
alignment_file(std::string const &a)protocols::evolution::AlignmentAAFinderinline
alignment_file_protocols::evolution::AlignmentAAFinderprivate
AlignmentAAFinder()protocols::evolution::AlignmentAAFinder
apply(core::pose::Pose const &p) const overrideprotocols::evolution::AlignmentAAFindervirtual
available_AAs_file() const protocols::evolution::AlignmentAAFinderinline
available_AAs_file(std::string const &a)protocols::evolution::AlignmentAAFinderinline
available_AAs_file_protocols::evolution::AlignmentAAFinderprivate
class_name()protocols::evolution::AlignmentAAFinderstatic
clear()protocols::filters::Filterinlinevirtual
clone() const overrideprotocols::evolution::AlignmentAAFinderinlinevirtual
exclude_AA_threshold() const protocols::evolution::AlignmentAAFinderinline
exclude_AA_threshold(core::Real const &t)protocols::evolution::AlignmentAAFinderinline
exclude_AA_threshold_protocols::evolution::AlignmentAAFinderprivate
Filter()protocols::filters::Filter
Filter(std::string const &)protocols::filters::Filter
Filter(Filter const &)protocols::filters::Filter
fresh_instance() const overrideprotocols::evolution::AlignmentAAFinderinlinevirtual
get_type() const protocols::filters::Filterinlinevirtual
get_user_defined_name() const protocols::filters::Filterinline
indel_motif_radius() const protocols::evolution::AlignmentAAFinderinline
indel_motif_radius(core::Size const &r)protocols::evolution::AlignmentAAFinderinline
indel_motif_radius_protocols::evolution::AlignmentAAFinderprivate
loop_seqid_threshold() const protocols::evolution::AlignmentAAFinderinline
loop_seqid_threshold(core::Real const &t)protocols::evolution::AlignmentAAFinderinline
loop_seqid_threshold_protocols::evolution::AlignmentAAFinderprivate
name() const overrideprotocols::evolution::AlignmentAAFindervirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::evolution::AlignmentAAFindervirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::filters::Filtervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::evolution::AlignmentAAFinderstatic
relax_mover() const protocols::evolution::AlignmentAAFinderinline
relax_mover(protocols::moves::MoverOP mover)protocols::evolution::AlignmentAAFinderinline
relax_mover_protocols::evolution::AlignmentAAFinderprivate
report(std::ostream &out, core::pose::Pose const &pose) const overrideprotocols::evolution::AlignmentAAFindervirtual
report_sm(core::pose::Pose const &pose) const overrideprotocols::evolution::AlignmentAAFindervirtual
score(core::pose::Pose &pose)protocols::filters::Filtervirtual
scorefxn() const protocols::evolution::AlignmentAAFinderinline
scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::evolution::AlignmentAAFinderinline
scorefxn_protocols::evolution::AlignmentAAFinderprivate
scorename_protocols::filters::Filterprotected
set_user_defined_name(std::string const &name)protocols::filters::Filterinline
~AlignmentAAFinder() overrideprotocols::evolution::AlignmentAAFinder
~Filter() overrideprotocols::filters::Filter
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