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protocols::forge::components::BDR Member List

This is the complete list of members for protocols::forge::components::BDR, including all inherited members.

add_instruction(BuildInstructionOP bi, String const &aa_during_design_refine=String())protocols::forge::components::BDR
allowed_surface_aa()protocols::forge::components::BDRprivatestatic
apply(Pose &pose) overrideprotocols::forge::components::BDRvirtual
BDR()protocols::forge::components::BDR
BDR(BDR const &rval)protocols::forge::components::BDR
BuildInstructionOP typedefprotocols::forge::components::BDR
BuildManager typedefprotocols::forge::components::BDR
centroid_build(Pose &pose)protocols::forge::components::BDRprivate
centroid_loop_mover_str() const protocols::forge::components::BDRinline
centroid_loop_mover_str(String const &loop_mover_str)protocols::forge::components::BDRinline
centroid_loop_mover_str_protocols::forge::components::BDRprivate
centroid_scorefunction() const protocols::forge::components::BDR
centroid_scorefunction(ScoreFunction const &sfx)protocols::forge::components::BDR
centroid_scorefunction(ScoreFunctionOP sfx)protocols::forge::components::BDR
centroid_sfx_protocols::forge::components::BDRprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::forge::components::BDRvirtual
create()protocols::moves::Movervirtual
create_directed_dependency(BuildInstructionOP u, BuildInstructionOP v)protocols::forge::components::BDR
design_info_protocols::forge::components::BDRprivate
design_refine(Pose &pose)protocols::forge::components::BDRprivate
DesignInfo typedefprotocols::forge::components::BDR
dr_cycles() const protocols::forge::components::BDRinline
dr_cycles(core::Size const cycles)protocols::forge::components::BDRinline
dr_cycles_protocols::forge::components::BDRprivate
fresh_instance() const overrideprotocols::forge::components::BDRvirtual
fullatom_scorefunction() const protocols::forge::components::BDR
fullatom_scorefunction(ScoreFunction const &sfx)protocols::forge::components::BDR
fullatom_scorefunction(ScoreFunctionOP sfx)protocols::forge::components::BDR
fullatom_sfx_protocols::forge::components::BDRprivate
generic_taskfactory()protocols::forge::components::BDRprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::forge::components::BDRvirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
Interval typedefprotocols::forge::components::BDR
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loops_buns_polar_calc_name()protocols::forge::components::BDRinlinestatic
manager_protocols::forge::components::BDRprivate
max_linear_chainbreak() const protocols::forge::components::BDRinline
max_linear_chainbreak(Real const threshold)protocols::forge::components::BDRinline
max_linear_chainbreak_protocols::forge::components::BDRprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
MoverOP typedefprotocols::forge::components::BDR
name()protocols::moves::Moverinlinestatic
neighborhood_buns_polar_calc_name()protocols::forge::components::BDRinlinestatic
neighborhood_calc_name()protocols::forge::components::BDRinlinestatic
operator=(BDR const &rval)protocols::forge::components::BDRprivate
Original2Modified typedefprotocols::forge::components::BDR
OriginalInterval2DesignString typedefprotocols::forge::components::BDR
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::forge::components::BDR
PoseCOP typedefprotocols::moves::Mover
process_continuous_design_string(Interval const &original_interval, String const &design_str, Original2Modified const &original2modified_interval_endpoints, TaskFactoryOP design_tf)protocols::forge::components::BDRprivate
process_insert_design_string(Interval const &original_interval, String const &design_str, Original2Modified const &original2modified_interval_endpoints, TaskFactoryOP design_tf)protocols::forge::components::BDRprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
Real typedefprotocols::forge::components::BDR
redesign_loop_neighborhood() const protocols::forge::components::BDRinline
redesign_loop_neighborhood(bool const flag)protocols::forge::components::BDRinline
redesign_loop_neighborhood_protocols::forge::components::BDRprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
resfile() const protocols::forge::components::BDRinline
resfile(String const &filename)protocols::forge::components::BDRinline
resfile_protocols::forge::components::BDRprivate
ScoreFunction typedefprotocols::forge::components::BDR
ScoreFunctionOP typedefprotocols::forge::components::BDR
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Size typedefprotocols::forge::components::BDR
String typedefprotocols::forge::components::BDR
Strings typedefprotocols::moves::Mover
Super typedefprotocols::forge::components::BDRprivate
TagCOP typedefprotocols::moves::Mover
TaskFactoryOP typedefprotocols::forge::components::BDR
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
use_fullmer() const protocols::forge::components::BDRinline
use_fullmer(bool const flag)protocols::forge::components::BDRinline
use_fullmer_protocols::forge::components::BDRprivate
use_sequence_bias() const protocols::forge::components::BDRinline
use_sequence_bias(bool const flag)protocols::forge::components::BDRinline
use_sequence_bias_protocols::forge::components::BDRprivate
vlb_protocols::forge::components::BDRprivate
~BDR() overrideprotocols::forge::components::BDR
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