| add_precomputed_energies(Pose &pose, PrecomputedPairEnergiesInteractionGraphOP pig) | protocols::minimization_packing::GreenPacker | private |
| apply(Pose &) override | protocols::minimization_packing::GreenPacker | virtual |
| cd_sfxn_ | protocols::minimization_packing::GreenPacker | private |
| ci_rpes_ | protocols::minimization_packing::GreenPacker | private |
| ci_sfxn_ | protocols::minimization_packing::GreenPacker | private |
| cleanup(core::pose::Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| compare_input_pose_geometry_to_reference(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| compute_absent_energies(Pose &pose, PrecomputedPairEnergiesInteractionGraphOP pig) | protocols::minimization_packing::GreenPacker | private |
| compute_absent_lrci_energies_for_residue_pair(Pose &pose, LongRangeTwoBodyEnergy const &lre, PrecomputedPairEnergiesInteractionGraphOP pig, core::Size lower_res, core::Size upper_res) | protocols::minimization_packing::GreenPacker | private |
| compute_absent_srci_energies_for_residue_pair(Pose &pose, PrecomputedPairEnergiesInteractionGraphOP pig, core::Size lower_res, core::Size upper_res) | protocols::minimization_packing::GreenPacker | private |
| compute_energies(Pose &pose, core::Size const threads_to_request) | protocols::minimization_packing::GreenPacker | private |
| compute_reference_intragroup_rpes(Pose &pose, core::Size const threads_to_request) | protocols::minimization_packing::GreenPacker | private |
| create() | protocols::moves::Mover | virtual |
| create_fresh_packer_neighbor_graph(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| create_fresh_rotamers(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| create_fresh_task(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| create_reference_data_ | protocols::minimization_packing::GreenPacker | private |
| create_reference_packer_neighbor_graph(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| create_reference_packer_task(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| create_reference_rotamers(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| curr_rot_2_orig_rot_ | protocols::minimization_packing::GreenPacker | private |
| curr_rotamers_with_correspondence_ | protocols::minimization_packing::GreenPacker | private |
| curr_rotamers_without_correspondence_ | protocols::minimization_packing::GreenPacker | private |
| current_ig_ | protocols::minimization_packing::GreenPacker | private |
| current_inter_group_packer_neighbor_graph_ | protocols::minimization_packing::GreenPacker | private |
| current_intra_group_packer_neighbor_graph_ | protocols::minimization_packing::GreenPacker | private |
| current_packer_neighbor_graph_ | protocols::minimization_packing::GreenPacker | private |
| current_rotamer_sets_ | protocols::minimization_packing::GreenPacker | private |
| current_rotamers_ | protocols::minimization_packing::GreenPacker | private |
| current_task_ | protocols::minimization_packing::GreenPacker | private |
| drop_inter_group_edges(Pose &pose, GraphOP packer_neighbor_graph) const | protocols::minimization_packing::GreenPacker | private |
| drop_intra_group_edges(Pose &pose, GraphOP packer_neighbor_graph) const | protocols::minimization_packing::GreenPacker | private |
| EnergyMap typedef | protocols::minimization_packing::GreenPacker | |
| find_reference_and_current_rotamer_correspondence(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| full_sfxn_ | protocols::minimization_packing::GreenPacker | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::minimization_packing::GreenPacker | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| Graph typedef | protocols::minimization_packing::GreenPacker | |
| GraphOP typedef | protocols::minimization_packing::GreenPacker | |
| GreenPacker() | protocols::minimization_packing::GreenPacker | |
| group_discriminator_ | protocols::minimization_packing::GreenPacker | private |
| group_ids_ | protocols::minimization_packing::GreenPacker | private |
| group_members_ | protocols::minimization_packing::GreenPacker | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_internal_correspondence_data(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| LongRangeTwoBodyEnergy typedef | protocols::minimization_packing::GreenPacker | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| orig_bb_tors_ | protocols::minimization_packing::GreenPacker | private |
| orig_rot_2_curr_rot_ | protocols::minimization_packing::GreenPacker | private |
| original_bb_rep_coords_ | protocols::minimization_packing::GreenPacker | private |
| original_rotamers_ | protocols::minimization_packing::GreenPacker | private |
| PackerTaskOP typedef | protocols::minimization_packing::GreenPacker | |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::minimization_packing::GreenPacker | |
| PoseCOP typedef | protocols::moves::Mover | |
| PrecomputedPairEnergiesInteractionGraph typedef | protocols::minimization_packing::GreenPacker | |
| PrecomputedPairEnergiesInteractionGraphOP typedef | protocols::minimization_packing::GreenPacker | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| Real typedef | protocols::minimization_packing::GreenPacker | |
| reference_moltenres_2_resid_ | protocols::minimization_packing::GreenPacker | private |
| reference_packer_neighbor_graph_ | protocols::minimization_packing::GreenPacker | private |
| reference_resid_2_moltenres_ | protocols::minimization_packing::GreenPacker | private |
| reference_rotamer_sets_ | protocols::minimization_packing::GreenPacker | private |
| reference_task_ | protocols::minimization_packing::GreenPacker | private |
| reference_task_factory_ | protocols::minimization_packing::GreenPacker | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| repack(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| reset_status() | protocols::moves::Mover | |
| RotamerSets typedef | protocols::minimization_packing::GreenPacker | |
| RotamerSetsOP typedef | protocols::minimization_packing::GreenPacker | |
| run_sa(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| ScoreFunction typedef | protocols::minimization_packing::GreenPacker | |
| ScoreFunctionOP typedef | protocols::minimization_packing::GreenPacker | |
| ScoreTypes typedef | protocols::minimization_packing::GreenPacker | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_group_discriminator(protocols::minimization_packing::GroupDiscriminatorOP) | protocols::minimization_packing::GreenPacker | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_reference_round_task_factory(TaskFactoryOP) | protocols::minimization_packing::GreenPacker | |
| set_scorefunction(ScoreFunction const &) | protocols::minimization_packing::GreenPacker | |
| set_task_factory(TaskFactoryOP) | protocols::minimization_packing::GreenPacker | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_weights_for_sfxn(ScoreFunction &sfxn, ScoreTypes const &scoretypes, EnergyMap const &weights) const | protocols::minimization_packing::GreenPacker | private |
| setup_reference_data(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Size typedef | protocols::minimization_packing::GreenPacker | |
| split_pose_into_groups(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| store_reference_pose_geometry(Pose &pose) | protocols::minimization_packing::GreenPacker | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory_ | protocols::minimization_packing::GreenPacker | private |
| TaskFactory typedef | protocols::minimization_packing::GreenPacker | |
| TaskFactoryOP typedef | protocols::minimization_packing::GreenPacker | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| Vector typedef | protocols::minimization_packing::GreenPacker | |
| ~GreenPacker() override | protocols::minimization_packing::GreenPacker | |
1.8.7