| add_filter(protocols::filters::FilterCOP filter) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| apply(core::pose::Pose &) override | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| BANGLE_MEAN_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| BANGLE_MIN() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| BANGLE_MIN_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| BANGLE_SD() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| BANGLE_SD_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| bump_overlap_factor_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| check_rama(core::Real old_rama_score, core::Real new_rama_score) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| clear_filters() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| count_bb_atoms(const core::pose::Pose &pose, const core::Size start_res, const core::Size end_res) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| count_bb_atoms_in_residue(const core::pose::Pose &pose, const core::Size position) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| create() | protocols::moves::Mover | virtual |
| do_hardsphere_bump_check_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| do_rama_check_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| do_sfxn_eval_every_iteration_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| end_res() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| end_res_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| filters_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| frequency_in_taboo_map(core::Size pos, core::conformation::ppo_torsion_bin) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_bb_atoms_for_residue(const core::conformation::Residue &res, const core::Size bb_atom_index) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| get_bump_overlap_factor() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| get_bumpcheck_atom_count_for_residue(const core::conformation::Residue &rsd) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| get_bumpcheck_atoms_for_residue(const core::conformation::Residue &rsd, const core::Size bumpcheck_atom_index) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_hardsphere_bump_check() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| get_idealize_loop_first() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_loop_sequence() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| get_name() const override | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_rama_check() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| get_sample_nonpivot_torsions() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| get_vary_bondangles() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| idealize_loop_first_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_C_N_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_C_N_CA_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_CA_CM_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_CA_CM_C_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_CM_C_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_CM_C_N_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_N_CA_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_beta_N_CA_CM_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_C_N_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_C_N_CA_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_CA_C_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_CA_C_N_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_N_CA_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| idl_N_CA_C_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| insert_sampled_torsion_string_into_taboo_map(core::conformation::torsion_bin_string const &ts) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| is_beta_aminoacid(const core::conformation::Residue &res) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| is_in_taboo_map(core::conformation::torsion_bin_string const &ts) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| KinematicMover() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| last_move_succeeded() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| last_move_succeeded_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop_begin() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| loop_begin_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| loop_end() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| loop_end_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| middle_res() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| middle_res_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| nonpivot_res_to_sweep_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| OMEGA_MEAN_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| perform_bump_check(core::pose::Pose const &pose, core::Size const start_res, core::Size const end_res) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| perform_rama_check(core::pose::Pose const &pose, utility::vector1< core::Real > const &t_ang, utility::vector1< core::Size > const &pivots, core::Size const start_res, core::Size const seg_len) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| perform_rama_check(core::pose::Pose const &pose, utility::vector1< core::Real > const &t_ang, utility::vector1< core::Size > const &pivots, core::Size const start_res, core::Size const middle_res, core::Size const end_res) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| perturber() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| perturber_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sample_nonpivot_torsions_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| seg_len_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| segment_length() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| sequence_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| set_bump_overlap_factor(core::Real bump_overlap_factor) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_defaults() | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| set_do_sfxn_eval_every_iteration(bool do_sfxn_eval) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| set_filters(utility::vector1< protocols::filters::FilterCOP > const &filters_in) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| set_hardsphere_bump_check(bool do_bump_check) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| set_idealize_loop_first(bool idealize) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_loop_begin_and_end(core::Size loop_begin, core::Size loop_end) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_nonpivot_bb_torsion_id(utility::vector1< core::Size > const &bbtorids) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_nonpivot_res_to_sweep(utility::vector1< core::Size > const &resids) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_perturber(KinematicPerturberOP perturber_in) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_pivots(core::Size start_res, core::Size middle_res, core::Size end_res) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| set_rama_check(bool do_rama_check) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | virtual |
| set_sample_nonpivot_torsions(bool sample) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_sfxn(core::scoring::ScoreFunctionCOP sfxn_in) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_sweep_nonpivot_torsions(bool sweep) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_sweep_nsteps(utility::vector1< core::Size > const &nsteps) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_sweep_start_angle(utility::vector1< core::Real > const &angles_in_degrees) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_sweep_step_size(utility::vector1< core::Real > const &angle_steps_in_degrees) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_temperature(core::Real temp_in) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_vary_bondangles(bool vary) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| sfxn_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| start_res() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | inline |
| start_res_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| Strings typedef | protocols::moves::Mover | |
| sweep_incomplete() const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| sweep_iterator_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| sweep_nonpivot_torsion_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| sweep_nonpivot_torsion_starts_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| sweep_step_sizes_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| sweep_torsion_ids_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| taboo_map_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| taboo_map_max_capacity_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| taboo_master_map_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| TagCOP typedef | protocols::moves::Mover | |
| temperature_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| torsion_features_string(core::pose::Pose const &pose) const | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| update_sequence(utility::vector1< core::chemical::AA > const &sequence) | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
| vary_bond_angles_ | protocols::loops::loop_closure::kinematic_closure::KinematicMover | private |
| ~KinematicMover() override | protocols::loops::loop_closure::kinematic_closure::KinematicMover | |
1.8.7