#include <P_AA_ss.hh>

Inheritance diagram for core::scoring::P_AA_ss:

Public Member Functions
	P_AA_ss ()
	ctor – Initialize the amino acid probability data structures More...

void	read_P_AA_ss ()
	Read the ss-dep amino acid probability file into P_AA_ss. More...

core::Real	P_AA_ss_energy (chemical::AA aa, char ss) const
	Probability energies from P(aa\|ss) More...

Private Attributes
utility::vector1< core::Real >	p_L_

utility::vector1< core::Real >	p_H_

utility::vector1< core::Real >	p_E_

core::Real	p0_L_

core::Real	p0_H_

core::Real	p0_E_

Constructor & Destructor Documentation

core::scoring::P_AA_ss::P_AA_ss ( )

ctor – Initialize the amino acid probability data structures

References read_P_AA_ss().

Member Function Documentation

core::Real core::scoring::P_AA_ss::P_AA_ss_energy	(	chemical::AA	aa,
		char	ss
	)		const

Probability energies from P(aa|ss)

Probability energies from P(aa|phi,psi): Low level calculation for non-terminus position You must pass an L amino acid 1-20 to this function! - if res have a backbone aa, apply it first and if res is D, switch to L first!

References protocols::cluster::calibur::aa, core::chemical::num_canonical_aas, p0_E_, p0_H_, p0_L_, p_E_, p_H_, p_L_, and core::scoring::TR().

Referenced by core::energy_methods::P_AA_ss_Energy::residue_energy().

void core::scoring::P_AA_ss::read_P_AA_ss ( )

Read the ss-dep amino acid probability file into P_AA_ss.

Read the amino acid probability file into P_AA_ss.