| acknowledge_partial_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info) | core::pack::interaction_graph::LazyEdge | |
| acknowledge_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info, core::PackerEnergy &new_energy) | core::pack::interaction_graph::LazyEdge | |
| acknowledge_state_zeroed(int node_ind) | core::pack::interaction_graph::LazyEdge | |
| acknowledge_substitution(int substituted_node_index, core::PackerEnergy const curr_state_energy, int nodes_new_state, SparseMatrixIndex const &nodes_new_state_sparse_info) | core::pack::interaction_graph::LazyEdge | inline |
| build_sc_only_rotamer() | core::pack::interaction_graph::LazyEdge | inline |
| count_dynamic_memory() const override | core::pack::interaction_graph::LazyEdge | virtual |
| count_static_memory() const override | core::pack::interaction_graph::LazyEdge | virtual |
| curr_state_energy_ | core::pack::interaction_graph::LazyEdge | private |
| declare_energies_final() override | core::pack::interaction_graph::LazyEdge | virtual |
| declare_energies_final_no_deletion() | core::pack::interaction_graph::LazyEdge | inlineprotected |
| edge_weight() const | core::pack::interaction_graph::EdgeBase | inline |
| edge_weight(Real) | core::pack::interaction_graph::EdgeBase | protected |
| EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::EdgeBase | |
| eval_type(int node_index) const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| FixedBBEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::FixedBBEdge | inline |
| force_aa_neighbors(int node1aa, int node2aa) override | core::pack::interaction_graph::LazyEdge | virtual |
| force_all_aa_neighbors() override | core::pack::interaction_graph::LazyEdge | virtual |
| get_aa_submatrix_energies(int node1aa, int node2aa) const | core::pack::interaction_graph::LazyEdge | |
| get_alternate_state_energy_first_node(int first_node_alt_state, int second_node_orig_state, SparseMatrixIndex const &second_node_orig_state_sparse_info, int first_node_state_offset_minus_1, int second_node_curr_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table) | core::pack::interaction_graph::LazyEdge | inlinestatic |
| get_alternate_state_energy_second_node(int first_node_orig_state, int second_node_alt_state, SparseMatrixIndex const &first_node_orig_state_sparse_info, SparseMatrixIndex const &second_node_alternate_state_sparse_info, int second_node_alt_state_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table) | core::pack::interaction_graph::LazyEdge | inlinestatic |
| get_current_two_body_energy() const | core::pack::interaction_graph::LazyEdge | |
| get_edge_table_ptr() | core::pack::interaction_graph::LazyEdge | |
| get_edges_position_in_nodes_edge_vector(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_energy_following_partial_state_assignment() | core::pack::interaction_graph::LazyEdge | |
| get_energy_for_state_pair(int const nodes_states[2], SparseMatrixIndex sparse_matrix_indices[2]) | core::pack::interaction_graph::LazyEdge | private |
| get_first_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_glycine_correction(int which_node, int state) const | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_glycine_correction_for_node(int node_ind, int state) const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| get_lazy_ig_owner() const | core::pack::interaction_graph::LazyEdge | inlineprivate |
| get_lazy_ig_owner() | core::pack::interaction_graph::LazyEdge | inlineprivate |
| get_lazy_node(int index) const | core::pack::interaction_graph::LazyEdge | inlineprivate |
| get_lazy_node(int index) | core::pack::interaction_graph::LazyEdge | inlineprivate |
| get_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node(int index) | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node_index(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_num_states_for_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_offsets_for_aatypes() | core::pack::interaction_graph::LazyEdge | |
| get_otf_node(int which_node) const | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_otf_node(int which_node) | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_other_ind(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_other_node(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_owner() const | core::pack::interaction_graph::EdgeBase | inline |
| get_owner() | core::pack::interaction_graph::EdgeBase | inline |
| get_proline_correction(int which_node, int state) const | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_proline_correction_for_node(int node_ind, int state) const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| get_second_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_second_node_num_states_per_aa() | core::pack::interaction_graph::LazyEdge | |
| get_sparse_aa_info(int node1aa, int node2aa) const override | core::pack::interaction_graph::LazyEdge | virtual |
| get_two_body_energy(int const node1state, int const node2state) const override | core::pack::interaction_graph::LazyEdge | virtual |
| get_two_body_table_size() const | core::pack::interaction_graph::LazyEdge | |
| LazyEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::LazyEdge | |
| LazyEdge() | core::pack::interaction_graph::LazyEdge | private |
| LazyEdge(LazyEdge const &) | core::pack::interaction_graph::LazyEdge | private |
| long_range_interactions_exist() const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| mark_edge_for_deletion() | core::pack::interaction_graph::EdgeBase | inlineprotected |
| marked_for_deletion() const | core::pack::interaction_graph::EdgeBase | inline |
| NOT_YET_COMPUTED_ENERGY | core::pack::interaction_graph::LazyEdge | static |
| note_long_range_interactions_exist() | core::pack::interaction_graph::OnTheFlyEdge | inline |
| note_short_range_interactions_exist() | core::pack::interaction_graph::OnTheFlyEdge | inline |
| OnTheFlyEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::OnTheFlyEdge | |
| operator=(LazyEdge const &) | core::pack::interaction_graph::LazyEdge | private |
| partial_state_assignment_ | core::pack::interaction_graph::LazyEdge | private |
| pd_edge_table_all_zeros() const | core::pack::interaction_graph::LazyEdge | inlineprotected |
| prepare_for_simulated_annealing() override | core::pack::interaction_graph::LazyEdge | virtual |
| prepare_for_simulated_annealing_no_deletion() | core::pack::interaction_graph::LazyEdge | inlineprotected |
| print_current_energy() const | core::pack::interaction_graph::LazyEdge | |
| ran_annealing_since_pair_energy_table_cleared_ | core::pack::interaction_graph::LazyEdge | private |
| same_edge(int node1, int node2) const | core::pack::interaction_graph::EdgeBase | |
| set_edge_weight(Real weight) override | core::pack::interaction_graph::LazyEdge | virtual |
| set_GlyCorrection_values(int node_not_necessarily_glycine, int state, core::PackerEnergy bb_regbb_E, core::PackerEnergy bb_glybb_E, core::PackerEnergy sc_regbb_E, core::PackerEnergy sc_glybb_E) | core::pack::interaction_graph::OnTheFlyEdge | |
| set_pos_in_node_edgevector(int callers_index, int position) | core::pack::interaction_graph::EdgeBase | |
| set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator) | core::pack::interaction_graph::EdgeBase | |
| set_ProCorrection_values(int node_not_necessarily_proline, int state, core::PackerEnergy bb_regbb_E, core::PackerEnergy bb_probb_E, core::PackerEnergy sc_regbb_E, core::PackerEnergy sc_probb_E) | core::pack::interaction_graph::OnTheFlyEdge | |
| set_sparse_aa_info(ObjexxFCL::FArray2_bool const &) override | core::pack::interaction_graph::LazyEdge | virtual |
| short_range_interactions_exist() const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| store_interaction_energy_first_node(SparseMatrixIndex const &second_node_orig_state_sparse_info, int first_node_state_offset_minus_1, int second_node_curr_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table, core::PackerEnergy interaction_energy) | core::pack::interaction_graph::LazyEdge | inlinestatic |
| store_interaction_energy_second_node(SparseMatrixIndex const &first_node_orig_state_sparse_info, SparseMatrixIndex const &second_node_alternate_state_sparse_info, int second_node_alt_state_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table, core::PackerEnergy interaction_energy) | core::pack::interaction_graph::LazyEdge | inlinestatic |
| two_body_energies_ | core::pack::interaction_graph::LazyEdge | mutableprivate |
| which_node(int node_index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| wipe_two_body_energies_for_node_state(int node, int state) | core::pack::interaction_graph::LazyEdge | private |
| ~EdgeBase() | core::pack::interaction_graph::EdgeBase | virtual |
| ~FixedBBEdge() override | core::pack::interaction_graph::FixedBBEdge | inline |
| ~LazyEdge() override | core::pack::interaction_graph::LazyEdge | |
| ~OnTheFlyEdge() override | core::pack::interaction_graph::OnTheFlyEdge | |
1.8.7