PoseFromSFRBuilder.hh File Reference

#include <core/io/pose_from_sfr/PoseFromSFRBuilder.fwd.hh>
#include <core/io/StructFileRep.hh>
#include <core/io/StructFileRepOptions.hh>
#include <core/io/ResidueInformation.hh>
#include <core/io/pose_from_sfr/chirality_resolution.fwd.hh>
#include <core/types.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID_Mask.fwd.hh>
#include <core/id/NamedAtomID_Map.hh>
#include <core/chemical/MergeBehaviorManager.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/PDBInfo.hh>
#include <utility/vector1.hh>
#include <utility/vector1_bool.hh>
#include <map>
#include <string>

Classes
class	core::io::pose_from_sfr::PoseFromSFRBuilder
	The PoseFromSFRBuilder is responsible for taking a partially-processed representation of a structure file, a structure-file repersentation or StructFileRep, and it constructs a Pose from it. Its primary output is a Pose, but it also keeps track of the "missing atoms:" the set of atoms in the Pose whose coordinates were not given in the original file. More...

Namespaces
	core
	A class for reading in the atom type properties.
	core::io
	core::io::pose_from_sfr

Functions
std::string	core::io::pose_from_sfr::convert_atom_name (std::string const &res_name, std::string const &atom_name)
	for nucleic acids, slightly better mechanism is below (convert_nucleic_acid_residue_info_to_standard) More...
std::string	core::io::pose_from_sfr::convert_res_name (std::string const &name)
void	core::io::pose_from_sfr::create_working_data (StructFileRepOptions const &options, StructFileRep const &sfr, utility::vector1< core::io::ResidueInformation > &rinfos)
bool	core::io::pose_from_sfr::update_atom_information_based_on_occupancy (StructFileRepOptions const &options, AtomInformation &ai)
void	core::io::pose_from_sfr::randomize_missing_coords (AtomInformation &ai)
	randomize missing density More...