| add_constraints(core::scoring::constraints::ConstraintCOPs &csts, core::Size const pose_resid1, core::Size const pose_resid2, core::conformation::Residue const &ref_ires, core::conformation::Residue const &ref_jres, MappedAtoms const &iatoms, MappedAtoms const &jatoms) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| apply(core::pose::Pose const &pose) const override | protocols::constraint_generator::AtomPairConstraintGenerator | virtual |
| AtomPairConstraintGenerator() | protocols::constraint_generator::AtomPairConstraintGenerator | |
| atoms_to_constrain(core::conformation::Residue const &pose_rsd, core::conformation::Residue const &ref_rsd) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| ca_only_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| class_name() | protocols::constraint_generator::AtomPairConstraintGenerator | inlinestatic |
| protocols::constraint_generator::ConstraintGenerator::class_name() const | protocols::constraint_generator::ConstraintGenerator | |
| clone() const override | protocols::constraint_generator::AtomPairConstraintGenerator | virtual |
| ConstraintGenerator(std::string const &class_name) | protocols::constraint_generator::ConstraintGenerator | |
| create_sequence_mapping(core::pose::Pose const &pose, core::pose::Pose const &ref_pose) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| generate_atom_pair_constraints(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &subset, core::select::residue_selector::ResidueSubset const &subset2) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| generate_atom_pair_constraints(core::pose::Pose const &pose, core::pose::Pose const &ref_pose, core::select::residue_selector::ResidueSubset const &subset, core::select::residue_selector::ResidueSubset const &subset2) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| generate_atom_pair_constraints(core::pose::Pose const &pose, core::pose::Pose const &ref_pose, core::select::residue_selector::ResidueSubset const &subset, core::select::residue_selector::ResidueSubset const &subset2, core::id::SequenceMapping const &seqmap) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| generate_atom_pair_constraints(core::pose::Pose const &pose, core::pose::Pose const &ref_pose, core::select::residue_selector::ResidueSubset const &subset, core::id::SequenceMapping const &seqmap) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| generate_constraints(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &subset) const | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| id() const | protocols::constraint_generator::ConstraintGenerator | |
| MappedAtoms typedef | protocols::constraint_generator::AtomPairConstraintGenerator | |
| max_distance_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| min_seq_sep_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) | protocols::constraint_generator::ConstraintGenerator | |
| parse_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::constraint_generator::AtomPairConstraintGenerator | protectedvirtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &citations) const override | protocols::constraint_generator::AtomPairConstraintGenerator | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::constraint_generator::AtomPairConstraintGenerator | static |
| reference_pose_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| sd_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| secondary_selector_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| selector_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| set_ca_only(bool const ca_only) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_id(std::string const &id) | protocols::constraint_generator::ConstraintGenerator | |
| set_max_distance(core::Real const max_dist) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_min_seq_sep(core::Size const min_seq_sep) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_reference_pose(core::pose::PoseCOP ref_pose) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_residue_selector(core::select::residue_selector::ResidueSelector const &selector) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_sd(core::Real const sd) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_secondary_residue_selector(core::select::residue_selector::ResidueSelector const &selector) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_unweighted_function(bool const unweighted) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_use_harmonic_function(bool const use_harmonic) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| set_weight(core::Real const weight) | protocols::constraint_generator::AtomPairConstraintGenerator | |
| unweighted_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| use_harmonic_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| weight_ | protocols::constraint_generator::AtomPairConstraintGenerator | private |
| ~AtomPairConstraintGenerator() override | protocols::constraint_generator::AtomPairConstraintGenerator | |
| ~ConstraintGenerator() override | protocols::constraint_generator::ConstraintGenerator | |
1.8.7