| AnnealableGraphBase() | core::pack::interaction_graph::AnnealableGraphBase | |
| AnnealableGraphBase(AnnealableGraphBase const &src) | core::pack::interaction_graph::AnnealableGraphBase | |
| any_vertex_state_unassigned() const override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| blanket_assign_state_0() override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| calculate_weighted_energy(utility::vector1< core::conformation::ResidueCOP > const &resvect, utility::vector1< core::Size > const ¤t_rotamer_ids, int const substitution_position=0) | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| clean_up_after_packing(core::pose::Pose &pose) override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| clear_consideration() | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| commit_considered_substitution() override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| consider_substitution(int node_ind, int new_state, core::PackerEnergy &delta_energy, core::PackerEnergy &prev_energy_for_node) override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| considered_energy_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| considered_node_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| considered_state_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| current_energy_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| current_residues_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| current_rotamer_ids_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| dependent_node_map_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| dependent_residue_map_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| get_energy_current_state_assignment() override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| get_num_nodes() const override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| get_num_states_for_node(int node) const override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| get_num_total_states() const override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| has_methods() | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | inlinevirtual |
| has_mirror_symm_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| initialize(core::scoring::ScoreFunction const &score_function, core::pose::Pose &pose, core::pack::rotamer_set::RotamerSets &rotamer_sets, utility::graph::GraphCOP) | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | |
| initialize_symmetry_info(core::pose::Pose const &pose) | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| is_symmetric_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| num_indep_nodes_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| per_node_rotamer_sets_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| prepare_graph_for_simulated_annealing() override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| ResidueArrayAnnealingEvaluator() | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | |
| ResidueArrayAnnealingEvaluator(ResidueArrayAnnealingEvaluator const &src) | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | |
| set_consideration(int const node_ind, int const node_resid, int const new_state, utility::vector1< std::pair< int, core::conformation::ResidueCOP > > &unset_info) | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| set_errorfull_deltaE_threshold(core::PackerEnergy deltaE) override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| set_network_state(ObjexxFCL::FArray1_int &node_states) override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| set_state_for_node(int node_ind, int new_state) override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | virtual |
| source_pose_residues_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| unset_consideration(utility::vector1< std::pair< int, core::conformation::ResidueCOP > > const &unset_info) | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| weighted_energy_methods_ | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| WeightedMethodPair typedef | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | private |
| ~AnnealableGraphBase() override | core::pack::interaction_graph::AnnealableGraphBase | |
| ~ResidueArrayAnnealingEvaluator() override | core::pack::interaction_graph::ResidueArrayAnnealingEvaluator | |