| allow_virtual_o2prime_hydrogens_ | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| apply(core::pose::Pose &pose) override | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | virtual |
| check_hbond_score(core::Vector const &H_xyz, core::Vector const &D_xyz, core::Real &best_score, core::Vector &best_hydrogen_xyz) | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| disallow_vary_geometry_proton_chi_ | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_best_hxyz(core::conformation::Residue const &residue, utility::vector1< core::Vector > const &ideal_hydrogen_xyz_positions, core::Size const abase, core::Size const abase2, core::Vector const &donor_xyz, core::Real &best_score, core::Vector &best_hydrogen_xyz) | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_ideal_hxyz_positions(core::conformation::Residue const &residue, core::conformation::Residue const &ideal_res, core::Size const j, core::kinematics::Stub const ¤t_input_stub, core::kinematics::Stub const &ideal_input_stub) | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_possible_hbond_acceptors(core::pose::Pose const &pose, core::Size const moving_res, core::Size const atomno) | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| hb_eval_tuples_ | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| hbond_database_ | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| hbond_options_ | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| PolarHydrogenPacker() | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| possible_hbond_acceptors_ | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| set_allow_virtual_o2prime_hydrogens(bool const setting) | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| virtualize_poor_scoring_o2prime_hydrogens(core::pose::Pose &pose, core::Size const i, core::Size const j, core::Real const best_score) | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | private |
| ~PolarHydrogenPacker() override | protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker | |
1.8.7