core::scoring::sc::MolecularSurfaceCalculator Member List

This is the complete list of members for core::scoring::sc::MolecularSurfaceCalculator, including all inherited members.

AddAtom(int molecule, Atom &atom)	core::scoring::sc::MolecularSurfaceCalculator
AddDot(int const molecule, int const type, Vec3 const &coor, ScValue const area, Vec3 const &pcen, Atom const &atom)	core::scoring::sc::MolecularSurfaceCalculator	protected
AddResidue(int molecule, core::conformation::Residue const &residue, bool apolar_only=false)	core::scoring::sc::MolecularSurfaceCalculator
AssignAtomRadius(Atom &atom)	core::scoring::sc::MolecularSurfaceCalculator	protected
AssignAttentionNumbers(std::vector< Atom > &atom)	core::scoring::sc::MolecularSurfaceCalculator	protectedvirtual
atoms	core::scoring::sc::MolecularSurfaceCalculator
band	core::scoring::sc::MolecularSurfaceCalculator
binwidth_dist	core::scoring::sc::MolecularSurfaceCalculator
binwidth_norm	core::scoring::sc::MolecularSurfaceCalculator
Calc(core::pose::Pose const &pose, core::Size jump_id=0)	core::scoring::sc::MolecularSurfaceCalculator	virtual
Calc()	core::scoring::sc::MolecularSurfaceCalculator	virtual
CalcDotsForAllAtoms(std::vector< Atom > &atoms)	core::scoring::sc::MolecularSurfaceCalculator	private
CalcDotsForAtoms(std::vector< Atom > &atoms)	core::scoring::sc::MolecularSurfaceCalculator	private
CheckAtomCollision2(Vec3 const &pijk, Atom const &atom1, Atom const &atom2, std::vector< Atom * > const &atoms)	core::scoring::sc::MolecularSurfaceCalculator	private
CheckPointCollision(Vec3 const &pcen, std::vector< Atom * > const &atoms)	core::scoring::sc::MolecularSurfaceCalculator	private
CheckProbeCollision(Vec3 const &point, std::vector< const PROBE * > const &nears, ScValue const r2)	core::scoring::sc::MolecularSurfaceCalculator	private
density	core::scoring::sc::MolecularSurfaceCalculator
DistancePointToLine(Vec3 const &cen, Vec3 const &axis, Vec3 const &pnt)	core::scoring::sc::MolecularSurfaceCalculator	private
dots	core::scoring::sc::MolecularSurfaceCalculator
FindNeighbordsAndBuriedAtoms(Atom &atom)	core::scoring::sc::MolecularSurfaceCalculator	private
FindNeighborsForAtom(Atom &atom1)	core::scoring::sc::MolecularSurfaceCalculator	private
GenerateConcaveSurface()	core::scoring::sc::MolecularSurfaceCalculator	private
GenerateConvexSurface(Atom const &atom1)	core::scoring::sc::MolecularSurfaceCalculator	private
GenerateMolecularSurfaces()	core::scoring::sc::MolecularSurfaceCalculator	protected
GenerateToroidalSurface(Atom &atom1, Atom &atom2, Vec3 const &uij, Vec3 const &tij, ScValue rij, int between)	core::scoring::sc::MolecularSurfaceCalculator	private
GetAtoms()	core::scoring::sc::MolecularSurfaceCalculator	inline
GetDots(int const moleculeid)	core::scoring::sc::MolecularSurfaceCalculator	inline
GetResults()	core::scoring::sc::MolecularSurfaceCalculator	inline
GetTrimmedDots(int const moleculeid)	core::scoring::sc::MolecularSurfaceCalculator	inline
Init()	core::scoring::sc::MolecularSurfaceCalculator	virtual
MolecularSurfaceCalculator()	core::scoring::sc::MolecularSurfaceCalculator
near_squared_size	core::scoring::sc::MolecularSurfaceCalculator
prevburied	core::scoring::sc::MolecularSurfaceCalculator
prevp	core::scoring::sc::MolecularSurfaceCalculator
probes	core::scoring::sc::MolecularSurfaceCalculator
radii_	core::scoring::sc::MolecularSurfaceCalculator	protectedstatic
radmax	core::scoring::sc::MolecularSurfaceCalculator
ReadScRadii()	core::scoring::sc::MolecularSurfaceCalculator	protected
Reset()	core::scoring::sc::MolecularSurfaceCalculator
results	core::scoring::sc::MolecularSurfaceCalculator
rp	core::scoring::sc::MolecularSurfaceCalculator
run_	core::scoring::sc::MolecularSurfaceCalculator	protected
ScValue typedef	core::scoring::sc::MolecularSurfaceCalculator
SecondLoop(Atom &pAtom1)	core::scoring::sc::MolecularSurfaceCalculator	private
sep	core::scoring::sc::MolecularSurfaceCalculator
settings	core::scoring::sc::MolecularSurfaceCalculator
SubArc(Vec3 const &cen, ScValue const rad, Vec3 const &axis, ScValue const density, Vec3 const &x, Vec3 const &v, std::vector< Vec3 > &points)	core::scoring::sc::MolecularSurfaceCalculator	private
SubCir(Vec3 const &cen, ScValue const rad, Vec3 const &north, ScValue const density, std::vector< Vec3 > &points)	core::scoring::sc::MolecularSurfaceCalculator	private
SubDiv(Vec3 const &cen, ScValue const rad, Vec3 const &x, Vec3 const &y, ScValue angle, ScValue density, std::vector< Vec3 > &points)	core::scoring::sc::MolecularSurfaceCalculator	private
ThirdLoop(Atom &pAtom1, Atom &pAtom, Vec3 const &uij, Vec3 const &tij, ScValue const rij)	core::scoring::sc::MolecularSurfaceCalculator	private
trimmed_dots	core::scoring::sc::MolecularSurfaceCalculator
use_rosetta_radii	core::scoring::sc::MolecularSurfaceCalculator
Vec3 typedef	core::scoring::sc::MolecularSurfaceCalculator
weight	core::scoring::sc::MolecularSurfaceCalculator
WildcardMatch(char const *query, char const *pattern, int const l)	core::scoring::sc::MolecularSurfaceCalculator	protected
~MolecularSurfaceCalculator() override	core::scoring::sc::MolecularSurfaceCalculator