#include <PropagateClashCheckFilter.hh>

Inheritance diagram for protocols::dna_dock::PropagateClashCheckFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

Public Member Functions
	PropagateClashCheckFilter ()

	PropagateClashCheckFilter (core::Real const fa_rep_thresh, std::string default_bridge_type, core::Real omega, core::Real rise, core::Size num_repeats, core::Size prop_dir)

	PropagateClashCheckFilter (PropagateClashCheckFilter const &rval)

	~PropagateClashCheckFilter () override

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

std::string	name () const override

void	set_fa_rep_thresh (core::Real fa_rep_thresh)

void	set_default_bridge_type (std::string default_bridge_type)

void	set_omega (core::Real omega)

void	set_rise (core::Real rise)

void	set_num_repeats (core::Size num_repeats)

core::Real	get_fa_rep_thresh () const

std::string	get_default_bridge_type () const

core::Real	get_omega () const

core::Real	get_rise () const

core::Size	get_num_repeats () const

void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
	parse xml More...

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Private Attributes
core::Real	fa_rep_thresh_

std::string	default_bridge_type_

core::Real	omega_

core::Real	rise_

core::Size	num_repeats_

core::Size	prop_dir_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::dna_dock::PropagateClashCheckFilter::DataMap

typedef protocols::filters::Filter protocols::dna_dock::PropagateClashCheckFilter::Filter

typedef protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::FilterOP

typedef core::pose::Pose protocols::dna_dock::PropagateClashCheckFilter::Pose

typedef core::Real protocols::dna_dock::PropagateClashCheckFilter::Real

typedef protocols::filters::Filter protocols::dna_dock::PropagateClashCheckFilter::Super

typedef utility::tag::TagCOP protocols::dna_dock::PropagateClashCheckFilter::TagCOP

Constructor & Destructor Documentation

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter ( )

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter	(	core::Real const	fa_rep_thresh,
		std::string	default_bridge_type,
		core::Real	omega,
		core::Real	rise,
		core::Size	num_repeats,
		core::Size	prop_dir
	)

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter ( PropagateClashCheckFilter const & rval )

default

protocols::dna_dock::PropagateClashCheckFilter::~PropagateClashCheckFilter ( )

overridedefault

Member Function Documentation

bool protocols::dna_dock::PropagateClashCheckFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References core::pose::append_pose_to_pose(), core::pose::Pose::apply_transform_Rx_plus_v(), default_bridge_type_, core::pose::Pose::energies(), core::scoring::fa_rep, fa_rep_thresh_, core::chemical::ResidueTypeBase::name3(), num_repeats_, core::scoring::omega, omega_, prop_dir_, core::pose::Pose::residue(), rise_, protocols::forge::remodel::rot_mat(), core::pose::Pose::size(), core::id::to_string(), core::scoring::Energies::total_energies(), protocols::TR(), trans(), protocols::matdes::trans_pose(), and core::conformation::Residue::type().

protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::dna_dock::PropagateClashCheckFilter::get_default_bridge_type ( ) const

References default_bridge_type_.

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_fa_rep_thresh ( ) const

References fa_rep_thresh_.

core::Size protocols::dna_dock::PropagateClashCheckFilter::get_num_repeats ( ) const

References num_repeats_.

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_omega ( ) const

References omega_.

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_rise ( ) const

References rise_.

std::string protocols::dna_dock::PropagateClashCheckFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

void protocols::dna_dock::PropagateClashCheckFilter::parse_my_tag	(	TagCOP	tag,
		basic::datacache::DataMap &
	)

overridevirtual

parse xml

Reimplemented from protocols::filters::Filter.

References default_bridge_type_, fa_rep_thresh_, num_repeats_, omega_, prop_dir_, and rise_.

void protocols::dna_dock::PropagateClashCheckFilter::set_default_bridge_type ( std::string default_bridge_type )

References default_bridge_type_.

void protocols::dna_dock::PropagateClashCheckFilter::set_fa_rep_thresh ( core::Real fa_rep_thresh )

References fa_rep_thresh_.

void protocols::dna_dock::PropagateClashCheckFilter::set_num_repeats ( core::Size num_repeats )

References num_repeats_.

void protocols::dna_dock::PropagateClashCheckFilter::set_omega ( core::Real omega )

References core::scoring::omega, and omega_.

void protocols::dna_dock::PropagateClashCheckFilter::set_rise ( core::Real rise )

References rise_.

Member Data Documentation

std::string protocols::dna_dock::PropagateClashCheckFilter::default_bridge_type_

private

Referenced by apply(), get_default_bridge_type(), parse_my_tag(), and set_default_bridge_type().

core::Real protocols::dna_dock::PropagateClashCheckFilter::fa_rep_thresh_

private

Referenced by apply(), get_fa_rep_thresh(), parse_my_tag(), and set_fa_rep_thresh().

core::Size protocols::dna_dock::PropagateClashCheckFilter::num_repeats_

private

Referenced by apply(), get_num_repeats(), parse_my_tag(), and set_num_repeats().

core::Real protocols::dna_dock::PropagateClashCheckFilter::omega_

private

Referenced by apply(), get_omega(), parse_my_tag(), and set_omega().

core::Size protocols::dna_dock::PropagateClashCheckFilter::prop_dir_

private

Referenced by apply(), and parse_my_tag().

core::Real protocols::dna_dock::PropagateClashCheckFilter::rise_

private

Referenced by apply(), get_rise(), parse_my_tag(), and set_rise().

The documentation for this class was generated from the following files:

src/protocols/dna_dock/PropagateClashCheckFilter.hh
src/protocols/dna_dock/PropagateClashCheckFilter.cc

Public Types

Public Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation