core::import_pose::libraries::RNA_JumpLibrary Class Reference

#include <RNA_JumpLibrary.hh>

Inheritance diagram for core::import_pose::libraries::RNA_JumpLibrary:

Public Member Functions
	~RNA_JumpLibrary () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
	RNA_JumpLibrary (std::string const &filename)
	constructor More...
void	check_forward_backward (std::string &atom_name, bool const forward, core::kinematics::Jump &j, RNA_PairingTemplateOP const &t) const
core::kinematics::Jump	get_random_base_pair_jump (core::chemical::ResidueType const &rt1, core::chemical::ResidueType const &rt2, core::chemical::rna::BaseEdge const edge1, core::chemical::rna::BaseEdge const edge2, core::chemical::rna::BaseDoubletOrientation const orientation, std::string &atom_name1, std::string &atom_name2, bool &success, bool const forward1=true, bool const forward2=true) const
bool	has_template (BasePairType const &base_pair_type) const
RNA_PairingTemplateList const &	rna_pairing_template_map (BasePairType const &base_pair_type) const

Private Member Functions
void	read_jumps_from_file () const
void	save_in_jump_library (core::Size const reschar1, core::Size const reschar2, char const edgechar1, char const edgechar2, char const orientation, std::string const &atom_name1, std::string const &atom_name2, core::kinematics::Jump const &jump1, core::kinematics::Jump const &jump2) const

Private Attributes
std::string	jump_library_filename_
RNA_PairingTemplateMap	rna_pairing_template_map_

Constructor & Destructor Documentation

core::import_pose::libraries::RNA_JumpLibrary::~RNA_JumpLibrary ( )

overridedefault

Automatically generated virtual destructor for class deriving directly from VirtualBase.

Auto-generated virtual destructor

core::import_pose::libraries::RNA_JumpLibrary::RNA_JumpLibrary

(

std::string const &

filename

)

constructor

Member Function Documentation

void core::import_pose::libraries::RNA_JumpLibrary::check_forward_backward	(	std::string &	atom_name,
		bool const	forward,
		core::kinematics::Jump &	j,
		RNA_PairingTemplateOP const &	t
	)		const

core::kinematics::Jump core::import_pose::libraries::RNA_JumpLibrary::get_random_base_pair_jump	(	core::chemical::ResidueType const &	rt1,
		core::chemical::ResidueType const &	rt2,
		core::chemical::rna::BaseEdge const	edge1,
		core::chemical::rna::BaseEdge const	edge2,
		core::chemical::rna::BaseDoubletOrientation const	orientation,
		std::string &	atom_name1,
		std::string &	atom_name2,
		bool &	success,
		bool const	forward1 = true,
		bool const	forward2 = true
	)		const

References core::import_pose::libraries::one_letter_from_rt(), PHOSPHATE, core::scoring::rg, and core::import_pose::libraries::tr().

bool core::import_pose::libraries::RNA_JumpLibrary::has_template

(

BasePairType const &

base_pair_type

)

const

void core::import_pose::libraries::RNA_JumpLibrary::read_jumps_from_file ( ) const

private

following is not actually const, but involves lazy loading to a mutable map.

References jump_library_filename_, core::kinematics::Jump::reverse(), rna_pairing_template_map_, save_in_jump_library(), and core::import_pose::libraries::tr().

RNA_PairingTemplateList const & core::import_pose::libraries::RNA_JumpLibrary::rna_pairing_template_map

(

BasePairType const &

base_pair_type

)

const

void core::import_pose::libraries::RNA_JumpLibrary::save_in_jump_library ( core::Size const  reschar1, core::Size const  reschar2, char const  edgechar1, char const  edgechar2, char const  orientation, std::string const &  atom_name1, std::string const &  atom_name2, core::kinematics::Jump const &  jump1, core::kinematics::Jump const &  jump2  ) const

private

References core::chemical::rna::ANY_BASE_DOUBLET_ORIENTATION, core::chemical::rna::ANY_BASE_EDGE, core::chemical::rna::get_edge_from_char(), and core::chemical::rna::get_orientation_from_char().

Referenced by read_jumps_from_file().

Member Data Documentation

std::string core::import_pose::libraries::RNA_JumpLibrary::jump_library_filename_

private

Referenced by read_jumps_from_file().

RNA_PairingTemplateMap core::import_pose::libraries::RNA_JumpLibrary::rna_pairing_template_map_

mutableprivate

Referenced by read_jumps_from_file().

---

The documentation for this class was generated from the following files:

• src/core/import_pose/libraries/RNA_JumpLibrary.hh
• src/core/import_pose/libraries/RNA_JumpLibrary.cc