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core::conformation::parametric Namespace Reference

Classes

class  BooleanValuedParameter
 BooleanValuedParameter class, used to store a single Boolean-valued parameter for parametric backbone generation. More...
 
class  Parameter
 Parameter class, used to store a single parameter for parametric backbone generation. More...
 
struct  ParameterizationCalculatorProperties
 
class  Parameters
 Parameters class, used to store sets of parameters for parametric backbone generation. More...
 
class  ParametersSet
 ParametersSet class, used to store sets of parameters for parametric backbone generation. More...
 
class  ParametrizationCalculator
 ParametrizationCalculator class, used for parametric backbone generation. More...
 
class  RealValuedParameter
 RealValuedParameter class, used to store a single real-valued parameter for parametric backbone generation. More...
 
class  RealVectorValuedParameter
 RealVectorValuedParameter class, used to store a single vector-valued parameter for parametric backbone generation. More...
 
class  SizeValuedParameter
 SizeValuedParameter class, used to store a single core::Size-valued parameter for parametric backbone generation. More...
 
class  SizeVectorValuedParameter
 SizeVectorValuedParameter class, used to store a single utility::vector1<core::Size>-valued parameter for parametric backbone generation. More...
 

Typedefs

typedef
utility::pointer::weak_ptr
< BooleanValuedParameter > 		BooleanValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< BooleanValuedParameter const > 		BooleanValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< BooleanValuedParameter > 		BooleanValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< BooleanValuedParameter const > 		BooleanValuedParameterCOP
 
typedef utility::vector1
< BooleanValuedParameterOP > 		BooleanValuedParameterOPs
 
typedef utility::vector1
< BooleanValuedParameterCOP > 		BooleanValuedParameterCOPs
 
typedef utility::vector1
< BooleanValuedParameterCAP > 		BooleanValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< Parameter > 		ParameterAP
 
typedef
utility::pointer::weak_ptr
< Parameter const > 		ParameterCAP
 
typedef
utility::pointer::shared_ptr
< Parameter > 		ParameterOP
 
typedef
utility::pointer::shared_ptr
< Parameter const > 		ParameterCOP
 
typedef utility::vector1
< ParameterOP > 		ParameterOPs
 
typedef utility::vector1
< ParameterCOP > 		ParameterCOPs
 
typedef utility::vector1
< ParameterCAP > 		ParameterCAPs
 
typedef
utility::pointer::weak_ptr
< Parameters > 		ParametersAP
 
typedef
utility::pointer::weak_ptr
< Parameters const > 		ParametersCAP
 
typedef
utility::pointer::shared_ptr
< Parameters > 		ParametersOP
 
typedef
utility::pointer::shared_ptr
< Parameters const > 		ParametersCOP
 
typedef utility::vector1
< ParametersOP > 		ParametersOPs
 
typedef utility::vector1
< ParametersCOP > 		ParametersCOPs
 
typedef utility::vector1
< ParametersCAP > 		ParametersCAPs
 
typedef
utility::pointer::weak_ptr
< ParametersSet > 		ParametersSetAP
 
typedef
utility::pointer::weak_ptr
< ParametersSet const > 		ParametersSetCAP
 
typedef
utility::pointer::shared_ptr
< ParametersSet > 		ParametersSetOP
 
typedef
utility::pointer::shared_ptr
< ParametersSet const > 		ParametersSetCOP
 
typedef utility::vector1
< ParametersSetOP > 		ParametersSetOPs
 
typedef utility::vector1
< ParametersSetCOP > 		ParametersSetCOPs
 
typedef utility::vector1
< ParametersSetCAP > 		ParametersSetCAPs
 
typedef
utility::pointer::weak_ptr
< ParametrizationCalculator > 		ParametrizationCalculatorAP
 
typedef
utility::pointer::weak_ptr
< ParametrizationCalculator
const > 		ParametrizationCalculatorCAP
 
typedef
utility::pointer::shared_ptr
< ParametrizationCalculator > 		ParametrizationCalculatorOP
 
typedef
utility::pointer::shared_ptr
< ParametrizationCalculator
const > 		ParametrizationCalculatorCOP
 
typedef utility::vector1
< ParametrizationCalculatorOP > 		ParametrizationCalculatorOPs
 
typedef utility::vector1
< ParametrizationCalculatorCOP > 		ParametrizationCalculatorCOPs
 
typedef utility::vector1
< ParametrizationCalculatorCAP > 		ParametrizationCalculatorCAPs
 
typedef
utility::pointer::weak_ptr
< RealValuedParameter > 		RealValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< RealValuedParameter const > 		RealValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< RealValuedParameter > 		RealValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< RealValuedParameter const > 		RealValuedParameterCOP
 
typedef utility::vector1
< RealValuedParameterOP > 		RealValuedParameterOPs
 
typedef utility::vector1
< RealValuedParameterCOP > 		RealValuedParameterCOPs
 
typedef utility::vector1
< RealValuedParameterCAP > 		RealValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< RealVectorValuedParameter > 		RealVectorValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< RealVectorValuedParameter
const > 		RealVectorValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< RealVectorValuedParameter > 		RealVectorValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< RealVectorValuedParameter
const > 		RealVectorValuedParameterCOP
 
typedef utility::vector1
< RealVectorValuedParameterOP > 		RealVectorValuedParameterOPs
 
typedef utility::vector1
< RealVectorValuedParameterCOP > 		RealVectorValuedParameterCOPs
 
typedef utility::vector1
< RealVectorValuedParameterCAP > 		RealVectorValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< SizeValuedParameter > 		SizeValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< SizeValuedParameter const > 		SizeValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< SizeValuedParameter > 		SizeValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< SizeValuedParameter const > 		SizeValuedParameterCOP
 
typedef utility::vector1
< SizeValuedParameterOP > 		SizeValuedParameterOPs
 
typedef utility::vector1
< SizeValuedParameterCOP > 		SizeValuedParameterCOPs
 
typedef utility::vector1
< SizeValuedParameterCAP > 		SizeValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< SizeVectorValuedParameter > 		SizeVectorValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< SizeVectorValuedParameter
const > 		SizeVectorValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< SizeVectorValuedParameter > 		SizeVectorValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< SizeVectorValuedParameter
const > 		SizeVectorValuedParameterCOP
 
typedef utility::vector1
< SizeVectorValuedParameterOP > 		SizeVectorValuedParameterOPs
 
typedef utility::vector1
< SizeVectorValuedParameterCOP > 		SizeVectorValuedParameterCOPs
 
typedef utility::vector1
< SizeVectorValuedParameterCAP > 		SizeVectorValuedParameterCAPs
 

Enumerations

enum  ParameterType {
  PT_generic_real = 1, PT_generic_nonnegative_valued_real, PT_generic_positive_valued_real, PT_angle,
  PT_boolean, PT_generic_integer, PT_generic_whole_number, PT_generic_natural_number,
  PT_generic_integer_vector, PT_generic_whole_number_vector, PT_generic_natural_number_vector, PT_generic_real_vector,
  PT_generic_nonnegative_valued_real_vector, PT_generic_positive_valued_real_vector, PT_angle_vector, PT_invalid_type,
  PT_end_of_list = PT_invalid_type
}
 The types of parameters possible. More...
 
enum  RealPerturbationType { RPT_gaussian =1, RPT_uniform, RPT_unknown_type, RPT_end_of_list =RPT_unknown_type }
 The types of perturbations. More...
 

Functions

static basic::Tracer TR ("core.conformation.parametric.BooleanValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.Parameter")
 
static basic::Tracer TR ("core.conformation.parametric.Parameters")
 
static basic::Tracer TR ("core.conformation.parametric.ParametersSet")
 
static basic::Tracer TR ("core.conformation.parametric.ParametrizationCalculator")
 
static basic::Tracer TR ("core.conformation.parametric.RealValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.RealVectorValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.SizeValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.SizeVectorValuedParameter")
 

Typedef Documentation

typedef utility::pointer::weak_ptr< BooleanValuedParameter > core::conformation::parametric::BooleanValuedParameterAP
typedef utility::pointer::weak_ptr< BooleanValuedParameter const > core::conformation::parametric::BooleanValuedParameterCAP
typedef utility::vector1< BooleanValuedParameterCAP > core::conformation::parametric::BooleanValuedParameterCAPs
typedef utility::pointer::shared_ptr< BooleanValuedParameter const > core::conformation::parametric::BooleanValuedParameterCOP
typedef utility::vector1< BooleanValuedParameterCOP > core::conformation::parametric::BooleanValuedParameterCOPs
typedef utility::pointer::shared_ptr< BooleanValuedParameter > core::conformation::parametric::BooleanValuedParameterOP
typedef utility::vector1< BooleanValuedParameterOP > core::conformation::parametric::BooleanValuedParameterOPs
typedef utility::pointer::weak_ptr< Parameter > core::conformation::parametric::ParameterAP
typedef utility::pointer::weak_ptr< Parameter const > core::conformation::parametric::ParameterCAP
typedef utility::vector1< ParameterCAP > core::conformation::parametric::ParameterCAPs
typedef utility::pointer::shared_ptr< Parameter const > core::conformation::parametric::ParameterCOP
typedef utility::vector1< ParameterCOP > core::conformation::parametric::ParameterCOPs
typedef utility::pointer::shared_ptr< Parameter > core::conformation::parametric::ParameterOP
typedef utility::vector1< ParameterOP > core::conformation::parametric::ParameterOPs
typedef utility::pointer::weak_ptr< Parameters > core::conformation::parametric::ParametersAP
typedef utility::pointer::weak_ptr< Parameters const > core::conformation::parametric::ParametersCAP
typedef utility::vector1< ParametersCAP > core::conformation::parametric::ParametersCAPs
typedef utility::pointer::shared_ptr< Parameters const > core::conformation::parametric::ParametersCOP
typedef utility::vector1< ParametersCOP > core::conformation::parametric::ParametersCOPs
typedef utility::pointer::shared_ptr< Parameters > core::conformation::parametric::ParametersOP
typedef utility::vector1< ParametersOP > core::conformation::parametric::ParametersOPs
typedef utility::pointer::weak_ptr< ParametersSet > core::conformation::parametric::ParametersSetAP
typedef utility::pointer::weak_ptr< ParametersSet const > core::conformation::parametric::ParametersSetCAP
typedef utility::vector1< ParametersSetCAP > core::conformation::parametric::ParametersSetCAPs
typedef utility::pointer::shared_ptr< ParametersSet const > core::conformation::parametric::ParametersSetCOP
typedef utility::vector1< ParametersSetCOP > core::conformation::parametric::ParametersSetCOPs
typedef utility::pointer::shared_ptr< ParametersSet > core::conformation::parametric::ParametersSetOP
typedef utility::vector1< ParametersSetOP > core::conformation::parametric::ParametersSetOPs
typedef utility::pointer::weak_ptr< ParametrizationCalculator > core::conformation::parametric::ParametrizationCalculatorAP
typedef utility::pointer::weak_ptr< ParametrizationCalculator const > core::conformation::parametric::ParametrizationCalculatorCAP
typedef utility::vector1< ParametrizationCalculatorCAP > core::conformation::parametric::ParametrizationCalculatorCAPs
typedef utility::pointer::shared_ptr< ParametrizationCalculator const > core::conformation::parametric::ParametrizationCalculatorCOP
typedef utility::vector1< ParametrizationCalculatorCOP > core::conformation::parametric::ParametrizationCalculatorCOPs
typedef utility::pointer::shared_ptr< ParametrizationCalculator > core::conformation::parametric::ParametrizationCalculatorOP
typedef utility::vector1< ParametrizationCalculatorOP > core::conformation::parametric::ParametrizationCalculatorOPs
typedef utility::pointer::weak_ptr< RealValuedParameter > core::conformation::parametric::RealValuedParameterAP
typedef utility::pointer::weak_ptr< RealValuedParameter const > core::conformation::parametric::RealValuedParameterCAP
typedef utility::vector1< RealValuedParameterCAP > core::conformation::parametric::RealValuedParameterCAPs
typedef utility::pointer::shared_ptr< RealValuedParameter const > core::conformation::parametric::RealValuedParameterCOP
typedef utility::vector1< RealValuedParameterCOP > core::conformation::parametric::RealValuedParameterCOPs
typedef utility::pointer::shared_ptr< RealValuedParameter > core::conformation::parametric::RealValuedParameterOP
typedef utility::vector1< RealValuedParameterOP > core::conformation::parametric::RealValuedParameterOPs
typedef utility::pointer::weak_ptr< RealVectorValuedParameter > core::conformation::parametric::RealVectorValuedParameterAP
typedef utility::pointer::weak_ptr< RealVectorValuedParameter const > core::conformation::parametric::RealVectorValuedParameterCAP
typedef utility::vector1< RealVectorValuedParameterCAP > core::conformation::parametric::RealVectorValuedParameterCAPs
typedef utility::pointer::shared_ptr< RealVectorValuedParameter const > core::conformation::parametric::RealVectorValuedParameterCOP
typedef utility::vector1< RealVectorValuedParameterCOP > core::conformation::parametric::RealVectorValuedParameterCOPs
typedef utility::pointer::shared_ptr< RealVectorValuedParameter > core::conformation::parametric::RealVectorValuedParameterOP
typedef utility::vector1< RealVectorValuedParameterOP > core::conformation::parametric::RealVectorValuedParameterOPs
typedef utility::pointer::weak_ptr< SizeValuedParameter > core::conformation::parametric::SizeValuedParameterAP
typedef utility::pointer::weak_ptr< SizeValuedParameter const > core::conformation::parametric::SizeValuedParameterCAP
typedef utility::vector1< SizeValuedParameterCAP > core::conformation::parametric::SizeValuedParameterCAPs
typedef utility::pointer::shared_ptr< SizeValuedParameter const > core::conformation::parametric::SizeValuedParameterCOP
typedef utility::vector1< SizeValuedParameterCOP > core::conformation::parametric::SizeValuedParameterCOPs
typedef utility::pointer::shared_ptr< SizeValuedParameter > core::conformation::parametric::SizeValuedParameterOP
typedef utility::vector1< SizeValuedParameterOP > core::conformation::parametric::SizeValuedParameterOPs
typedef utility::pointer::weak_ptr< SizeVectorValuedParameter > core::conformation::parametric::SizeVectorValuedParameterAP
typedef utility::pointer::weak_ptr< SizeVectorValuedParameter const > core::conformation::parametric::SizeVectorValuedParameterCAP
typedef utility::vector1< SizeVectorValuedParameterCAP > core::conformation::parametric::SizeVectorValuedParameterCAPs
typedef utility::pointer::shared_ptr< SizeVectorValuedParameter const > core::conformation::parametric::SizeVectorValuedParameterCOP
typedef utility::vector1< SizeVectorValuedParameterCOP > core::conformation::parametric::SizeVectorValuedParameterCOPs
typedef utility::pointer::shared_ptr< SizeVectorValuedParameter > core::conformation::parametric::SizeVectorValuedParameterOP
typedef utility::vector1< SizeVectorValuedParameterOP > core::conformation::parametric::SizeVectorValuedParameterOPs

Enumeration Type Documentation

enum core::conformation::parametric::ParameterType

The types of parameters possible.

Enumerator
PT_generic_real 
PT_generic_nonnegative_valued_real 
PT_generic_positive_valued_real 
PT_angle 
PT_boolean 
PT_generic_integer 
PT_generic_whole_number 
PT_generic_natural_number 
PT_generic_integer_vector 
PT_generic_whole_number_vector 
PT_generic_natural_number_vector 
PT_generic_real_vector 
PT_generic_nonnegative_valued_real_vector 
PT_generic_positive_valued_real_vector 
PT_angle_vector 
PT_invalid_type 
PT_end_of_list 
enum core::conformation::parametric::RealPerturbationType

The types of perturbations.

If you add to this list, be sure to update the perturbation_type_string_from_enum() function.

Enumerator
RPT_gaussian 
RPT_uniform 
RPT_unknown_type 
RPT_end_of_list 

Function Documentation

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.Parameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.SizeValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.RealVectorValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.BooleanValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.Parameters"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.SizeVectorValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.RealValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.ParametersSet"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.ParametrizationCalculator"  )
static
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