protocols::antibody::GraftedStemOptimizer Member List

This is the complete list of members for protocols::antibody::GraftedStemOptimizer, including all inherited members.

ab_info_	protocols::antibody::GraftedStemOptimizer	private
apply(core::pose::Pose &pose) override	protocols::antibody::GraftedStemOptimizer	virtual
benchmark_	protocols::antibody::GraftedStemOptimizer	private
cdr_loop_	protocols::antibody::GraftedStemOptimizer	private
cdr_name_	protocols::antibody::GraftedStemOptimizer	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
deep_optimization_	protocols::antibody::GraftedStemOptimizer	private
enable_benchmark_mode(bool const &setting)	protocols::antibody::GraftedStemOptimizer	inline
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_Cstem_foldtree(core::pose::Pose const &pose) const	protocols::antibody::GraftedStemOptimizer
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_N_C_stems_foldtree(core::pose::Pose const &pose) const	protocols::antibody::GraftedStemOptimizer
get_name() const override	protocols::antibody::GraftedStemOptimizer	virtual
get_native_pose() const	protocols::moves::Mover
get_Nstem_foldtree(core::pose::Pose const &pose) const	protocols::antibody::GraftedStemOptimizer
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_stem_movemap(core::pose::Pose const &pose, std::string const &type, bool const &include_nb_sc=false) const	protocols::antibody::GraftedStemOptimizer
get_stem_taskfactory(core::pose::Pose &pose, std::string const &type, bool const &include_nb_sc=false) const	protocols::antibody::GraftedStemOptimizer
get_type() const	protocols::moves::Mover	inline
GraftedStemOptimizer(CDRNameEnum const &cdr_name, AntibodyInfoOP antibody_info)	protocols::antibody::GraftedStemOptimizer
GraftedStemOptimizer(GraftedStemOptimizer const &rhs)	protocols::antibody::GraftedStemOptimizer
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init()	protocols::antibody::GraftedStemOptimizer	private
initForEqualOperatorAndCopyConstructor(GraftedStemOptimizer &lhs, GraftedStemOptimizer const &rhs)	protocols::antibody::GraftedStemOptimizer	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mc_	protocols::antibody::GraftedStemOptimizer	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
operator=(GraftedStemOptimizer const &rhs)	protocols::antibody::GraftedStemOptimizer
optimize_stems_	protocols::antibody::GraftedStemOptimizer	private
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scorefxn_	protocols::antibody::GraftedStemOptimizer	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_deep_optimization(bool const &setting)	protocols::antibody::GraftedStemOptimizer	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_scorefxn(core::scoring::ScoreFunctionOP setting)	protocols::antibody::GraftedStemOptimizer
set_stem_size(core::Size const &setting)	protocols::antibody::GraftedStemOptimizer
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_protocol(core::pose::Pose &pose)	protocols::antibody::GraftedStemOptimizer	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
stem_size_	protocols::antibody::GraftedStemOptimizer	mutableprivate
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~GraftedStemOptimizer() override	protocols::antibody::GraftedStemOptimizer