core::pack::task::operation::NoRepackDisulfides Class Reference

prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date More...

#include <NoRepackDisulfides.hh>

Inheritance diagram for core::pack::task::operation::NoRepackDisulfides:

Public Types
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	NoRepackDisulfides ()
	default constructor More...
	NoRepackDisulfides (NoRepackDisulfides const &rval)
	copy constructor More...
	~NoRepackDisulfides () override
	default destructor More...
TaskOperationOP	clone () const override
	clone this object More...
void	apply (Pose const &pose, PackerTask &task) const override
	apply operations to PackerTask More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	parse_tag (TagCOP, DataMap &)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Types
typedef core::pack::task::operation::TaskOperation	Super

Detailed Description

prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date

Member Typedef Documentation

typedef core::pack::task::PackerTask core::pack::task::operation::NoRepackDisulfides::PackerTask

typedef core::pose::Pose core::pack::task::operation::NoRepackDisulfides::Pose

typedef core::pack::task::operation::TaskOperation core::pack::task::operation::NoRepackDisulfides::Super

private

typedef core::pack::task::operation::TaskOperationOP core::pack::task::operation::NoRepackDisulfides::TaskOperationOP

Constructor & Destructor Documentation

core::pack::task::operation::NoRepackDisulfides::NoRepackDisulfides

(

)

default constructor

core::pack::task::operation::NoRepackDisulfides::NoRepackDisulfides ( NoRepackDisulfides const &  rval )

default

copy constructor

core::pack::task::operation::NoRepackDisulfides::~NoRepackDisulfides ( )

overridedefault

default destructor

Member Function Documentation

void core::pack::task::operation::NoRepackDisulfides::apply ( Pose const &  pose, PackerTask &  task  ) const

overridevirtual

apply operations to PackerTask

Implements core::pack::task::operation::TaskOperation.

References core::chemical::aa_cys, core::conformation::Residue::atom_index(), core::chemical::DISULFIDE, core::chemical::ResidueTypeBase::get_disulfide_atom_name(), core::conformation::Residue::has_variant_type(), core::pose::symmetry::is_symmetric(), core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue(), core::chemical::ResidueType::residue_connection_id_for_atom(), core::conformation::Residue::residue_connection_partner(), core::pose::Pose::size(), core::pose::symmetry::symmetry_info(), core::pack::task::operation::TR(), and core::conformation::Residue::type().

Referenced by protocols::task_operations::ProteinInterfaceDesignOperation::apply(), protocols::flexpep_docking::FlexPepDockingProtocol::prepack_only(), and protocols::simple_ddg::ddG::setup_task().

NoRepackDisulfides::TaskOperationOP core::pack::task::operation::NoRepackDisulfides::clone ( ) const

overridevirtual

clone this object

Implements core::pack::task::operation::TaskOperation.

std::string core::pack::task::operation::NoRepackDisulfides::keyname ( )

static

Referenced by core::pack::task::operation::NoRepackDisulfidesCreator::keyname(), and provide_xml_schema().

void core::pack::task::operation::NoRepackDisulfides::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_empty().

Referenced by core::pack::task::operation::NoRepackDisulfidesCreator::provide_xml_schema().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/NoRepackDisulfides.hh
• src/core/pack/task/operation/NoRepackDisulfides.cc