| add_external_loop_rotamer(StepWiseSamplerOneValueOP const &rotamer) | protocols::stepwise::sampler::StepWiseSamplerOneValueComb | inlinevirtual |
| protocols::stepwise::sampler::StepWiseSamplerSizedComb::add_external_loop_rotamer(StepWiseSamplerSizedOP const &rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| add_internal_loop_rotamer(StepWiseSamplerSizedOP const &rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| apply(core::pose::Pose &pose) override | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | virtual |
| apply(core::pose::Pose &pose, core::Size const id) override | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | virtual |
| apply(core::pose::Pose &pose, core::conformation::Residue const &moving_residue_at_origin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| apply(core::pose::Pose &pose, core::conformation::Residue const &moving_residue_at_origin, core::Size const id) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| apply(core::conformation::Residue &residue_initially_at_origin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| apply(core::Vector &xyz_initially_at_origin, core::Size const seqpos) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| apply_by_jump(core::pose::Pose &pose, core::Size const &seq_num, core::kinematics::Stub const &moving_res_stub) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| calculate_jump(core::pose::Pose &pose, core::Size const seq_num, core::kinematics::Stub const &moving_res_stub) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clear_rotamer() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| fast_forward(core::Size const sampler_number) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
| protocols::stepwise::sampler::StepWiseSamplerSized::fast_forward() | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| fast_forward_to_end() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| fast_forward_to_next_euler_gamma() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| fast_forward_to_next_translation() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_residue_at_origin(core::Size const seqpos) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_stub() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| get_stub(utility::vector1< core::Size > const &id_list) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| get_stub(core::Size const id) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| get_type() const | protocols::moves::Mover | inline |
| get_value_list(core::Size const id) | protocols::stepwise::sampler::StepWiseSamplerOneValueComb | |
| get_value_list(utility::vector1< core::Size > const &id_list) | protocols::stepwise::sampler::StepWiseSamplerOneValueComb | |
| get_values() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| id() const | protocols::stepwise::sampler::StepWiseSamplerSized | inline |
| id2list(core::Size const id) const | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| id_ | protocols::stepwise::sampler::StepWiseSamplerSized | protected |
| id_list_ | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() override | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | virtual |
| is_init() const | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| jump_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| jump_atom_id_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| list2id(utility::vector1< core::Size > const &id_list) const | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| moving_partition_res() const | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inline |
| moving_partition_res_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| moving_res() const | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inline |
| moving_res_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| moving_res_stub_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| moving_residue_at_origin() const | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inline |
| moving_residue_at_origin_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| name() | protocols::moves::Mover | inlinestatic |
| not_end() const override | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| operator++() override | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| pose_at_origin() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| pose_at_origin_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| random() const | protocols::stepwise::sampler::StepWiseSampler | inlinevirtual |
| reference_res() const | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inline |
| reference_res_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| reference_stub() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inline |
| reference_stub_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset() override | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| reset_status() | protocols::moves::Mover | |
| RigidBodyStepWiseSampler(core::pose::Pose const &pose, core::Size const moving_res) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| RigidBodyStepWiseSampler(core::Size const moving_res, core::conformation::Residue const &moving_residue_at_origin, core::kinematics::Stub const &reference_stub) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| rotamer_list_ | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| SamplerPlusPlus() | protocols::toolbox::SamplerPlusPlus | inline |
| set_and_reinit(T ¶ms, T const &setting) | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_euler_alpha_values(core::Real const centroid_euler_alpha_min, core::Real const centroid_euler_alpha_max, core::Real const centroid_euler_alpha_bin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| set_euler_gamma_values(core::Real const centroid_euler_gamma_min, core::Real const centroid_euler_gamma_max, core::Real const centroid_euler_gamma_bin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| set_euler_z_values(core::Real const centroid_euler_z_min, core::Real const centroid_euler_z_max, core::Real const centroid_euler_z_bin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| set_id(core::Size const setting) | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| set_init(bool const setting) | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_random(bool const setting) override | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_x_values(core::Real const centroid_x_min, core::Real const centroid_x_max, core::Real const centroid_x_bin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| set_y_values(core::Real const centroid_y_min, core::Real const centroid_y_max, core::Real const centroid_y_bin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| set_z_values(core::Real const centroid_z_min, core::Real const centroid_z_max, core::Real const centroid_z_bin) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| show(std::ostream &out, core::Size const indent=0) const override | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| protocols::moves::Mover::show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| size() const override | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| StepWiseSampler() | protocols::stepwise::sampler::StepWiseSampler | inline |
| StepWiseSamplerOneValueComb() | protocols::stepwise::sampler::StepWiseSamplerOneValueComb | |
| StepWiseSamplerSized() | protocols::stepwise::sampler::StepWiseSamplerSized | |
| StepWiseSamplerSizedComb() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
| StepWiseSamplerSizedComb(StepWiseSamplerSizedOP outer_loop_rotamer, StepWiseSamplerSizedOP inner_loop_rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| TorsionList typedef | protocols::toolbox::SamplerPlusPlus | |
| transform_single_residue(core::pose::Pose &pose, core::Size const &seq_num, core::conformation::Residue const &rsd_at_origin, core::kinematics::Stub const &moving_res_stub) | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| type() const override | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inlinevirtual |
| protocols::moves::Mover::type(const std::string &type_in) | protocols::moves::Mover | inline |
| value_range() | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | inline |
| value_range_ | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | private |
| ~RigidBodyStepWiseSampler() override | protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler | |
| ~SamplerPlusPlus() override | protocols::toolbox::SamplerPlusPlus | inline |
| ~StepWiseSampler() override | protocols::stepwise::sampler::StepWiseSampler | inline |
| ~StepWiseSamplerOneValueComb() override | protocols::stepwise::sampler::StepWiseSamplerOneValueComb | |
| ~StepWiseSamplerSized() override | protocols::stepwise::sampler::StepWiseSamplerSized | |
| ~StepWiseSamplerSizedComb() override | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
1.8.7