core::conformation::membrane::AqueousPoreParameters Class Reference

A class for defining an aqueous pore. More...

#include <AqueousPoreParameters.hh>

Inheritance diagram for core::conformation::membrane::AqueousPoreParameters:

Public Member Functions
	AqueousPoreParameters ()
	AqueousPoreParameters (core::Real const min_center_x, core::Real const max_center_x, core::Real const min_center_y, core::Real const max_center_y, core::Real const min_major_radius, core::Real const max_major_radius, core::Real const min_minor_radius, core::Real const max_minor_radius, core::Real const min_rotation_angle, core::Real const max_rotation_angle, utility::vector1< core::Real > boundaries, piecewise_poly pore_center_x, piecewise_poly pore_center_y, piecewise_poly pore_major_radius, piecewise_poly pore_minor_radius, piecewise_poly pore_rotation_angle)
	Construct an AqueousPoreParameters object from scratch. More...
	AqueousPoreParameters (AqueousPoreParameters const &src)
	~AqueousPoreParameters () override
AqueousPoreParametersOP	clone () const
core::Real	boundaries (core::Size index) const
core::Real	pore_center_x (core::Real const zcoord) const
core::Real	pore_center_y (core::Real const zcoord) const
core::Real	pore_major_radius (core::Real const zcoord) const
core::Real	pore_minor_radius (core::Real const zcoord) const
numeric::MathMatrix< core::Real >	pore_rotation (core::Real const zcoord) const
core::Real	pore_center_x_deriv (core::Real const zcoord) const
core::Real	pore_center_y_deriv (core::Real const zcoord) const
core::Real	pore_major_radius_deriv (core::Real const zcoord) const
core::Real	pore_minor_radius_deriv (core::Real const zcoord) const
core::Real	pore_rotation_deriv (core::Real const zcood) const

Private Types
typedef utility::vector1 < numeric::CubicPolynomial >	piecewise_poly

Private Member Functions
core::Real	eval_piecewise_cubic_polynomial (utility::vector1< numeric::CubicPolynomial > piecewise_poly, core::Real const min_score, core::Real const max_score, core::Real const zcoord) const
core::Real	eval_piecewise_cubic_polynomial_deriv (utility::vector1< numeric::CubicPolynomial > piecewise_poly, core::Real const zcoord) const

Private Attributes
core::Real	min_center_x_
core::Real	max_center_x_
core::Real	min_center_y_
core::Real	max_center_y_
core::Real	min_major_radius_
core::Real	max_major_radius_
core::Real	min_minor_radius_
core::Real	max_minor_radius_
core::Real	min_rotation_angle_
core::Real	max_rotation_angle_
utility::vector1< core::Real >	boundaries_
piecewise_poly	pore_center_x_
piecewise_poly	pore_center_y_
piecewise_poly	pore_major_radius_
piecewise_poly	pore_minor_radius_
piecewise_poly	pore_rotation_angle_

Detailed Description

A class for defining an aqueous pore.

Member Typedef Documentation

typedef utility::vector1< numeric::CubicPolynomial > core::conformation::membrane::AqueousPoreParameters::piecewise_poly

private

Constructor & Destructor Documentation

core::conformation::membrane::AqueousPoreParameters::AqueousPoreParameters

(

)

Referenced by clone().

core::conformation::membrane::AqueousPoreParameters::AqueousPoreParameters	(	core::Real const	min_center_x,
		core::Real const	max_center_x,
		core::Real const	min_center_y,
		core::Real const	max_center_y,
		core::Real const	min_major_radius,
		core::Real const	max_major_radius,
		core::Real const	min_minor_radius,
		core::Real const	max_minor_radius,
		core::Real const	min_rotation_angle,
		core::Real const	max_rotation_angle,
		utility::vector1< core::Real >	boundaries,
		piecewise_poly	pore_center_x,
		piecewise_poly	pore_center_y,
		piecewise_poly	pore_major_radius,
		piecewise_poly	pore_minor_radius,
		piecewise_poly	pore_rotation_angle
	)

Construct an AqueousPoreParameters object from scratch.

core::conformation::membrane::AqueousPoreParameters::AqueousPoreParameters

(

AqueousPoreParameters const &

src

)

core::conformation::membrane::AqueousPoreParameters::~AqueousPoreParameters ( )

override

Member Function Documentation

core::Real core::conformation::membrane::AqueousPoreParameters::boundaries

(

core::Size

index

)

const

References boundaries_.

AqueousPoreParametersOP core::conformation::membrane::AqueousPoreParameters::clone

(

)

const

References AqueousPoreParameters().

core::Real core::conformation::membrane::AqueousPoreParameters::eval_piecewise_cubic_polynomial ( utility::vector1< numeric::CubicPolynomial >  piecewise_poly, core::Real const  min_score, core::Real const  max_score, core::Real const  zcoord  ) const

private

References boundaries_.

Referenced by pore_center_x(), pore_center_y(), pore_major_radius(), pore_minor_radius(), and pore_rotation().

core::Real core::conformation::membrane::AqueousPoreParameters::eval_piecewise_cubic_polynomial_deriv ( utility::vector1< numeric::CubicPolynomial >  piecewise_poly, core::Real const  zcoord  ) const

private

References boundaries_.

Referenced by pore_center_x_deriv(), pore_center_y_deriv(), pore_major_radius_deriv(), pore_minor_radius_deriv(), and pore_rotation_deriv().

core::Real core::conformation::membrane::AqueousPoreParameters::pore_center_x

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial(), max_center_x_, min_center_x_, and pore_center_x_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_center_x_deriv

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial_deriv(), and pore_center_x_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_center_y

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial(), max_center_y_, min_center_y_, and pore_center_y_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_center_y_deriv

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial_deriv(), and pore_center_y_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_major_radius

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial(), max_major_radius_, min_major_radius_, and pore_major_radius_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_major_radius_deriv

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial_deriv(), and pore_major_radius_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_minor_radius

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial(), max_minor_radius_, min_minor_radius_, and pore_minor_radius_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_minor_radius_deriv

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial_deriv(), and pore_minor_radius_.

numeric::MathMatrix< core::Real > core::conformation::membrane::AqueousPoreParameters::pore_rotation

(

core::Real const

zcoord

)

const

References eval_piecewise_cubic_polynomial(), max_rotation_angle_, min_rotation_angle_, and pore_rotation_angle_.

core::Real core::conformation::membrane::AqueousPoreParameters::pore_rotation_deriv

(

core::Real const

zcood

)

const

References eval_piecewise_cubic_polynomial_deriv(), and pore_rotation_angle_.

Member Data Documentation

utility::vector1< core::Real > core::conformation::membrane::AqueousPoreParameters::boundaries_

private

Referenced by boundaries(), eval_piecewise_cubic_polynomial(), and eval_piecewise_cubic_polynomial_deriv().

core::Real core::conformation::membrane::AqueousPoreParameters::max_center_x_

private

Referenced by pore_center_x().

core::Real core::conformation::membrane::AqueousPoreParameters::max_center_y_

private

Referenced by pore_center_y().

core::Real core::conformation::membrane::AqueousPoreParameters::max_major_radius_

private

Referenced by pore_major_radius().

core::Real core::conformation::membrane::AqueousPoreParameters::max_minor_radius_

private

Referenced by pore_minor_radius().

core::Real core::conformation::membrane::AqueousPoreParameters::max_rotation_angle_

private

Referenced by pore_rotation().

core::Real core::conformation::membrane::AqueousPoreParameters::min_center_x_

private

Referenced by pore_center_x().

core::Real core::conformation::membrane::AqueousPoreParameters::min_center_y_

private

Referenced by pore_center_y().

core::Real core::conformation::membrane::AqueousPoreParameters::min_major_radius_

private

Referenced by pore_major_radius().

core::Real core::conformation::membrane::AqueousPoreParameters::min_minor_radius_

private

Referenced by pore_minor_radius().

core::Real core::conformation::membrane::AqueousPoreParameters::min_rotation_angle_

private

Referenced by pore_rotation().

piecewise_poly core::conformation::membrane::AqueousPoreParameters::pore_center_x_

private

Referenced by pore_center_x(), and pore_center_x_deriv().

piecewise_poly core::conformation::membrane::AqueousPoreParameters::pore_center_y_

private

Referenced by pore_center_y(), and pore_center_y_deriv().

piecewise_poly core::conformation::membrane::AqueousPoreParameters::pore_major_radius_

private

Referenced by pore_major_radius(), and pore_major_radius_deriv().

piecewise_poly core::conformation::membrane::AqueousPoreParameters::pore_minor_radius_

private

Referenced by pore_minor_radius(), and pore_minor_radius_deriv().

piecewise_poly core::conformation::membrane::AqueousPoreParameters::pore_rotation_angle_

private

Referenced by pore_rotation(), and pore_rotation_deriv().

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The documentation for this class was generated from the following files:

• src/core/conformation/membrane/AqueousPoreParameters.hh
• src/core/conformation/membrane/AqueousPoreParameters.cc