protocols::antibody::AntibodyNumbering Struct Reference

#include <AntibodyNumberingParser.hh>

Public Attributes
AntibodyNumberingSchemeEnum	numbering_scheme
CDRDefinitionEnum	cdr_definition
utility::vector1 < utility::vector1 < PDBLandmarkOP > >	cdr_numbering
std::map< CDRDefinitionEnum, utility::vector1 < utility::vector1 < PDBLandmarkOP > > >	cdr_definition_transform
std::map < AntibodyNumberingSchemeEnum, utility::vector1 < PDBLandmarkOP > >	numbering_scheme_transform

Member Data Documentation

CDRDefinitionEnum protocols::antibody::AntibodyNumbering::cdr_definition

Referenced by protocols::antibody::AntibodyInfo::AntibodyInfo(), protocols::antibody::AntibodyNumberingParser::debug_print(), protocols::antibody::AntibodyNumberingParser::get_antibody_numbering(), protocols::antibody::AntibodyInfo::get_cdr_definition_transform(), protocols::antibody::AntibodyInfo::get_CDR_end(), protocols::antibody::AntibodyInfo::get_CDR_length(), protocols::antibody::AntibodyInfo::get_CDR_loop(), protocols::antibody::AntibodyInfo::get_CDR_sequence_with_stem(), protocols::antibody::AntibodyInfo::get_CDR_start(), protocols::antibody::AntibodyInfo::get_current_CDRDefinition(), protocols::antibody::AntibodyInfo::init(), protocols::antibody::AntibodyNumberingParser::read_cdr_definition_numbering_line(), and protocols::antibody::AntibodyInfo::set_default().

std::map< CDRDefinitionEnum , utility::vector1< utility::vector1< PDBLandmarkOP > > > protocols::antibody::AntibodyNumbering::cdr_definition_transform

Referenced by protocols::antibody::AntibodyInfo::cdr_definition_transform_present(), protocols::antibody::AntibodyNumberingParser::debug_print(), protocols::antibody::AntibodyInfo::get_cdr_definition_transform(), protocols::antibody::AntibodyNumberingParser::read_cdr_definition_numbering_line(), and protocols::antibody::AntibodyNumberingParser::read_cdr_definition_transform_line().

utility::vector1< utility::vector1< PDBLandmarkOP > > protocols::antibody::AntibodyNumbering::cdr_numbering

Referenced by protocols::antibody::AntibodyInfo::get_CDR_end(), protocols::antibody::AntibodyInfo::get_CDR_end_PDB_num(), protocols::antibody::AntibodyInfo::get_CDR_start(), protocols::antibody::AntibodyInfo::get_CDR_start_PDB_num(), protocols::antibody::AntibodyNumberingParser::read_cdr_definition_file(), protocols::antibody::AntibodyNumberingParser::read_cdr_definition_numbering_line(), and protocols::antibody::AntibodyInfo::setup_CDRsInfo().

AntibodyNumberingSchemeEnum protocols::antibody::AntibodyNumbering::numbering_scheme

Referenced by protocols::antibody::AntibodyInfo::AntibodyInfo(), protocols::antibody::AntibodyNumberingParser::debug_print(), protocols::antibody::AntibodyNumberingParser::get_antibody_numbering(), protocols::antibody::AntibodyInfo::get_current_AntibodyNumberingScheme(), protocols::antibody::AntibodyNumberingParser::get_equivalent_landmark(), protocols::antibody::AntibodyInfo::get_landmark_resnum(), protocols::antibody::AntibodyInfo::init(), protocols::antibody::AntibodyNumberingParser::read_cdr_definition_numbering_line(), and protocols::antibody::AntibodyInfo::set_default().

std::map< AntibodyNumberingSchemeEnum, utility::vector1< PDBLandmarkOP > > protocols::antibody::AntibodyNumbering::numbering_scheme_transform

Referenced by protocols::antibody::AntibodyNumberingConverterMover::apply(), protocols::antibody::AntibodyNumberingParser::get_equivalent_landmark(), protocols::antibody::get_matching_landmark(), protocols::antibody::AntibodyInfo::get_numbering_scheme_landmarks(), protocols::antibody::AntibodyInfo::numbering_scheme_transform_present(), protocols::antibody::AntibodyNumberingParser::read_numbering_scheme_file(), and protocols::antibody::AntibodyNumberingParser::read_scheme_numbering_line().

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The documentation for this struct was generated from the following file:

• src/protocols/antibody/AntibodyNumberingParser.hh