| activate_daemon_mode() | protocols::pack_daemon::DaemonSet | |
| add_npd_property_calculator_for_state(core::Size daemon_index, std::string const &npd_property, core::Size npd_index) | protocols::pack_daemon::DaemonSet | |
| add_npdpro_calculator_creator(NPDPropCalculatorCreatorOP) | protocols::pack_daemon::DaemonSet | |
| add_pack_daemon(core::Size daemon_index, std::string const &pdb_name, std::string const &correspondence_file_name, std::string const &secondary_resfile) | protocols::pack_daemon::DaemonSet | |
| add_pack_daemon(core::Size daemon_index, std::string const &pose_file_name, Pose const &pose, std::string const &correspondence_file_filename, std::istream &correspondence_file, std::string const &secondary_refile_file_filename, std::istream &secondary_resfile) | protocols::pack_daemon::DaemonSet | |
| compute_energy_for_assignment(Entity const &entity) | protocols::pack_daemon::DaemonSet | |
| ConstDaemonList typedef | protocols::pack_daemon::DaemonSet | |
| ConstDaemonListIter typedef | protocols::pack_daemon::DaemonSet | |
| daemon_poses_ | protocols::pack_daemon::DaemonSet | private |
| daemon_tasks_ | protocols::pack_daemon::DaemonSet | private |
| DaemonIndices typedef | protocols::pack_daemon::DaemonSet | |
| DaemonList typedef | protocols::pack_daemon::DaemonSet | |
| DaemonListIter typedef | protocols::pack_daemon::DaemonSet | |
| daemons() const | protocols::pack_daemon::DaemonSet | |
| daemons_ | protocols::pack_daemon::DaemonSet | private |
| DaemonSet() | protocols::pack_daemon::DaemonSet | |
| dlig_nmeg_limit_ | protocols::pack_daemon::DaemonSet | private |
| Entity typedef | protocols::pack_daemon::DaemonSet | |
| entity_resfile() const | protocols::pack_daemon::DaemonSet | |
| entity_resfile_ | protocols::pack_daemon::DaemonSet | private |
| entity_task() const | protocols::pack_daemon::DaemonSet | |
| entity_task_ | protocols::pack_daemon::DaemonSet | private |
| EntityOP typedef | protocols::pack_daemon::DaemonSet | |
| graceful_exit() const | protocols::pack_daemon::DaemonSet | private |
| include_background_energies_ | protocols::pack_daemon::DaemonSet | private |
| limit_dlig_mem_usage_ | protocols::pack_daemon::DaemonSet | private |
| mark_entity_as_unimportant(Entity const &) | protocols::pack_daemon::DaemonSet | |
| mark_last_entity_as_important() | protocols::pack_daemon::DaemonSet | |
| n_npd_properties() const | protocols::pack_daemon::DaemonSet | |
| n_npd_properties_ | protocols::pack_daemon::DaemonSet | private |
| ndaemons() const | protocols::pack_daemon::DaemonSet | |
| ndaemons_ | protocols::pack_daemon::DaemonSet | private |
| npd_calcs_for_poses_ | protocols::pack_daemon::DaemonSet | private |
| npd_calculator_creators_ | protocols::pack_daemon::DaemonSet | private |
| NPDIndAndCalc typedef | protocols::pack_daemon::DaemonSet | |
| num_entities_ | protocols::pack_daemon::DaemonSet | private |
| PackerTask typedef | protocols::pack_daemon::DaemonSet | |
| PackerTaskOP typedef | protocols::pack_daemon::DaemonSet | |
| Pose typedef | protocols::pack_daemon::DaemonSet | |
| PoseOP typedef | protocols::pack_daemon::DaemonSet | |
| process_add_daemon_message() | protocols::pack_daemon::DaemonSet | private |
| process_discard_entity_message() | protocols::pack_daemon::DaemonSet | private |
| process_pose_request_for_entity() | protocols::pack_daemon::DaemonSet | private |
| process_state_energy_evaluations_for_entity() | protocols::pack_daemon::DaemonSet | private |
| recieve_daemon_inds_requiring_pose_creation() const | protocols::pack_daemon::DaemonSet | private |
| recieve_entity() const | protocols::pack_daemon::DaemonSet | private |
| ResfileContentsOP typedef | protocols::pack_daemon::DaemonSet | |
| retrieve_relevant_poses_for_entity(Entity const &, DaemonIndices const &) const | protocols::pack_daemon::DaemonSet | |
| score_function_ | protocols::pack_daemon::DaemonSet | private |
| ScoreFunction typedef | protocols::pack_daemon::DaemonSet | |
| ScoreFunctionOP typedef | protocols::pack_daemon::DaemonSet | |
| set_dlig_nmeg_limit(core::Size setting) | protocols::pack_daemon::DaemonSet | |
| set_entity_resfile(std::string const &resfile) | protocols::pack_daemon::DaemonSet | |
| set_entity_resfile(std::istream &resfile, std::string const &resfile_name) | protocols::pack_daemon::DaemonSet | |
| set_include_background_energies(bool setting) | protocols::pack_daemon::DaemonSet | |
| set_score_function(ScoreFunction const &) | protocols::pack_daemon::DaemonSet | |
| set_task_factory(core::pack::task::TaskFactoryOP factory) | protocols::pack_daemon::DaemonSet | |
| setup_daemons() | protocols::pack_daemon::DaemonSet | |
| SizeRealPair typedef | protocols::pack_daemon::DaemonSet | |
| SizeRealPairs typedef | protocols::pack_daemon::DaemonSet | |
| StateEsAndNPDs typedef | protocols::pack_daemon::DaemonSet | |
| task_factory_ | protocols::pack_daemon::DaemonSet | private |
| ~DaemonSet() override | protocols::pack_daemon::DaemonSet | |
1.8.7