| add_constraints_to_pose(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, bool accept_blocks_missing_header) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| add_constraints_to_pose_for_block_without_clearing_and_header_processing(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| add_pregenerated_constraints_to_pose(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| allowed_res_name3_at_position(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| apply(core::pose::Pose &pose) | protocols::forge::remodel::RemodelEnzdesCstModule | |
| backbone_only_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
| blueprint_cst_definition(core::pose::Pose &pose) | protocols::forge::remodel::RemodelEnzdesCstModule | |
| clear_active_pose_constraints_for_block(core::pose::Pose &pose, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| contains_position(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| cst_pairs_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | protected |
| cstblocksize_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
| enable_constraint_scoreterms(core::scoring::ScoreFunctionOP scorefxn) | protocols::forge::remodel::RemodelEnzdesCstModule | |
| enz_cst_params(core::Size block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| enz_cst_params_missing_in_pose(core::pose::Pose const &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| enz_cst_params_size() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| EnzConstraintIO(core::chemical::ResidueTypeSetCOP src_restype_set) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| get_self_ptr() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| get_self_ptr() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| get_self_weak_ptr() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| get_self_weak_ptr() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| initialize_with_mcfi_list(utility::vector1< MatchConstraintFileInfoListOP > mcfi_list_vec) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| is_backbone_only_cst(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| mcfi_list(core::Size block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| mcfi_lists_size() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| num_mcfi_lists() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| ordered_constrained_positions(core::pose::Pose const &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| process_pdb_header(core::pose::Pose &pose, bool accept_missing_blocks) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| read_enzyme_cstfile(std::string fname) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remap_resid(core::id::SequenceMapping const &smap) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remodel_data_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
| RemodelEnzdesCstModule(protocols::forge::remodel::RemodelData external_data) | protocols::forge::remodel::RemodelEnzdesCstModule | |
| remove_constraints_from_pose(core::pose::Pose &pose, bool const keep_covalent, bool const fail_on_constraints_missing) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_constraints_from_pose_for_block(core::pose::Pose &pose, core::Size cst_block, bool const fail_on_constraints_missing) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_position_from_template_res(core::pose::Pose &pose, core::Size pos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_position_from_template_res_for_block(core::pose::Pose &pose, core::Size pos, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| scorefxn_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
| set_external_position_for_resA_in_parameter_block(core::Size cst_block, core::Size respos) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| set_external_position_for_resB_in_parameter_block(core::Size cst_block, core::Size respos) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| set_position_for_missing_res_in_parameter_block(core::pose::Pose &pose, core::Size cst_block, core::Size respos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| show_cst_definitions() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| target_downstream_res() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| update_pdb_remarks_for_backbone_params(core::pose::Pose &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| use_all_blocks() | protocols::forge::remodel::RemodelEnzdesCstModule | |
| use_backbone_only_blocks() | protocols::forge::remodel::RemodelEnzdesCstModule | |
| ~EnzConstraintIO() override | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| ~RemodelEnzdesCstModule() override | protocols::forge::remodel::RemodelEnzdesCstModule | |
1.8.7