protocols::struct_fragment::StructFragmentMover Member List

This is the complete list of members for protocols::struct_fragment::StructFragmentMover, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::struct_fragment::StructFragmentMover	virtual
changed_frags_	protocols::struct_fragment::StructFragmentMover	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::struct_fragment::StructFragmentMover	inlinevirtual
collector_to_picker(protocols::frag_picker::FragmentPickerOP pickIt, core::Size size, core::Size seqlength)	protocols::struct_fragment::StructFragmentMover	private
create()	protocols::moves::Mover	virtual
default_value_for_empty_file()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_large_frag_size()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_loop_angle_conf()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_n_candidates()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_n_frags()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_output_frag_files()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_prefix()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_secstruct()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_small_frag_size()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_steal_large_frags()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
default_value_for_steal_small_frags()	protocols::struct_fragment::StructFragmentMover	inlineprivatestatic
evaluate_job()	protocols::struct_fragment::StructFragmentMover	private
frag_weight_file_	protocols::struct_fragment::StructFragmentMover	private
fresh_instance() const override	protocols::struct_fragment::StructFragmentMover	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_frag_weight_file() const	protocols::struct_fragment::StructFragmentMover	inline
get_fragments(core::pose::Pose const &pose)	protocols::struct_fragment::StructFragmentMover	private
get_fragset(protocols::frag_picker::FragmentPickerOP pickIt, core::Size position, core::Size size)	protocols::struct_fragment::StructFragmentMover	private
get_input_pose() const	protocols::moves::Mover
get_large_frag_size() const	protocols::struct_fragment::StructFragmentMover	inline
get_large_frage_file() const	protocols::struct_fragment::StructFragmentMover	inline
get_last_move_status() const	protocols::moves::Mover
get_loop_angle_conf() const	protocols::struct_fragment::StructFragmentMover	inline
get_n_candidates() const	protocols::struct_fragment::StructFragmentMover	inline
get_n_frags() const	protocols::struct_fragment::StructFragmentMover	inline
get_name() const override	protocols::struct_fragment::StructFragmentMover	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_output_frag_files() const	protocols::struct_fragment::StructFragmentMover	inline
get_prefix() const	protocols::struct_fragment::StructFragmentMover	inline
get_secstruct(core::pose::Pose const &pose) const	protocols::struct_fragment::StructFragmentMover	protected
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_sequence_profile() const	protocols::struct_fragment::StructFragmentMover	inline
get_small_frag_file() const	protocols::struct_fragment::StructFragmentMover	inline
get_small_frag_size() const	protocols::struct_fragment::StructFragmentMover	inline
get_steal_large_frags() const	protocols::struct_fragment::StructFragmentMover	inline
get_steal_small_frags() const	protocols::struct_fragment::StructFragmentMover	inline
get_type() const	protocols::moves::Mover	inline
get_vall_file() const	protocols::struct_fragment::StructFragmentMover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
large_frag_file_	protocols::struct_fragment::StructFragmentMover	private
large_frag_size_	protocols::struct_fragment::StructFragmentMover	private
largeF_	protocols::struct_fragment::StructFragmentMover	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_angle_conf_	protocols::struct_fragment::StructFragmentMover	private
make_fragment_picker(core::pose::Pose pose, std::string vall_file_name)	protocols::struct_fragment::StructFragmentMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::struct_fragment::StructFragmentMover	inlinestatic
name()	protocols::moves::Mover	inlinestatic
output_frag_files_	protocols::struct_fragment::StructFragmentMover	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::struct_fragment::StructFragmentMover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::struct_fragment::StructFragmentMover	static
read_frag_file(std::string frag_file)	protocols::struct_fragment::StructFragmentMover	private
read_frag_files(std::string small_frag_file, std::string large_frag_file)	protocols::struct_fragment::StructFragmentMover	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
secstruct_	protocols::struct_fragment::StructFragmentMover	private
sequence_profile_	protocols::struct_fragment::StructFragmentMover	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_frag_weight_file(std::string frag_weight_file)	protocols::struct_fragment::StructFragmentMover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_large_frag_file(std::string large_frag_file)	protocols::struct_fragment::StructFragmentMover	inline
set_large_frag_size(core::Size large_frag_size)	protocols::struct_fragment::StructFragmentMover	inline
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop_angle_conf(core::Real loop_angle_conf)	protocols::struct_fragment::StructFragmentMover	inline
set_n_candidates(core::Size n_candidates)	protocols::struct_fragment::StructFragmentMover	inline
set_n_frags(core::Size n_frags)	protocols::struct_fragment::StructFragmentMover	inline
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_output_frag_files(bool output_frag_files)	protocols::struct_fragment::StructFragmentMover	inline
set_prefix(std::string prefix)	protocols::struct_fragment::StructFragmentMover	inline
set_secstruct(std::string const &ss)	protocols::struct_fragment::StructFragmentMover
set_sequence_profile(std::string sequence_profile)	protocols::struct_fragment::StructFragmentMover	inline
set_small_frag_file(std::string small_frag_file)	protocols::struct_fragment::StructFragmentMover	inline
set_small_frag_size(core::Size small_frag_size)	protocols::struct_fragment::StructFragmentMover	inline
set_steal_large_frags(bool steal_large_frags)	protocols::struct_fragment::StructFragmentMover	inline
set_steal_small_frags(bool steal_small_frags)	protocols::struct_fragment::StructFragmentMover	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_use_dssp(bool const use_dssp)	protocols::struct_fragment::StructFragmentMover
set_vall_file(std::string vall_file)	protocols::struct_fragment::StructFragmentMover	inline
shift_fragset(core::fragment::FragSetOP fset, core::id::SequenceMapping const &seqmap)	protocols::struct_fragment::StructFragmentMover	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
small_frag_file_	protocols::struct_fragment::StructFragmentMover	private
small_frag_size_	protocols::struct_fragment::StructFragmentMover	private
smallF_	protocols::struct_fragment::StructFragmentMover	private
steal_fragments(core::pose::Pose const &pose, utility::vector1< core::fragment::FragSetOP > fsets)	protocols::struct_fragment::StructFragmentMover	private
steal_fragments_by_size(core::pose::Pose const &pose, core::fragment::FragSetOP fset, core::Size size)	protocols::struct_fragment::StructFragmentMover	private
steal_large_frags_	protocols::struct_fragment::StructFragmentMover	private
steal_small_frags_	protocols::struct_fragment::StructFragmentMover	private
Strings typedef	protocols::moves::Mover
StructFragmentMover()	protocols::struct_fragment::StructFragmentMover
structPicker_	protocols::struct_fragment::StructFragmentMover	private
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_dssp_	protocols::struct_fragment::StructFragmentMover	private
vall_file_	protocols::struct_fragment::StructFragmentMover	private
~StructFragmentMover() override	protocols::struct_fragment::StructFragmentMover