| absolute_ccd_tolerance_ | protocols::rna::movers::RNA_LoopCloser | private |
| apply(core::pose::Pose &pose) override | protocols::rna::movers::RNA_LoopCloser | virtual |
| apply(core::pose::Pose &pose, std::map< core::Size, core::Size > const &connections) | protocols::rna::movers::RNA_LoopCloser | |
| apply(core::pose::Pose &pose, std::map< core::Size, core::Size > const &connections, core::Size const &cutpoint) | protocols::rna::movers::RNA_LoopCloser | |
| apply(core::pose::Pose &pose, core::Size const &cutpoint) | protocols::rna::movers::RNA_LoopCloser | |
| apply(core::pose::Pose &pose, utility::vector1< core::Size > const &cutpoints) | protocols::rna::movers::RNA_LoopCloser | |
| atom_level_domain_map_ | protocols::rna::movers::RNA_LoopCloser | private |
| attempt_closure_cutoff_ | protocols::rna::movers::RNA_LoopCloser | private |
| ccd_tolerance_ | protocols::rna::movers::RNA_LoopCloser | private |
| check_closure(core::pose::Pose const &pose, core::Size const i, core::Real ccd_tolerance=-1.0) | protocols::rna::movers::RNA_LoopCloser | |
| check_closure(core::pose::Pose const &pose, core::Real ccd_tolerance=-1.0) | protocols::rna::movers::RNA_LoopCloser | |
| check_tolerance_ | protocols::rna::movers::RNA_LoopCloser | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::rna::movers::RNA_LoopCloser | inlinevirtual |
| create() | protocols::moves::Mover | virtual |
| fast_scan(bool const &setting) | protocols::rna::movers::RNA_LoopCloser | inline |
| fast_scan_ | protocols::rna::movers::RNA_LoopCloser | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| gap_distance_cutoff_ | protocols::rna::movers::RNA_LoopCloser | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_chainbreak_xyz(core::pose::Pose const &pose, core::Size const cutpoint, utility::vector1< core::Vector > &upstream_xyzs, utility::vector1< core::Vector > &downstream_xyzs, core::Size const cutpoint_next_input=0) const | protocols::rna::movers::RNA_LoopCloser | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_cutpoints_closed(core::pose::Pose const &pose) const | protocols::rna::movers::RNA_LoopCloser | |
| get_dist_err(core::pose::Pose const &pose, core::Size const cutpoint) const | protocols::rna::movers::RNA_LoopCloser | |
| get_gap_distance(core::pose::Pose &pose, core::Size const cutpoint) const | protocols::rna::movers::RNA_LoopCloser | private |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::rna::movers::RNA_LoopCloser | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| NUM_ROUNDS_ | protocols::rna::movers::RNA_LoopCloser | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| passes_fast_scan(core::pose::Pose &pose, core::Size const i) const | protocols::rna::movers::RNA_LoopCloser | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| rna_ccd_close(core::pose::Pose &pose, std::map< core::Size, core::Size > const &connections, core::Size const &cutpoint) const | protocols::rna::movers::RNA_LoopCloser | private |
| RNA_LoopCloser() | protocols::rna::movers::RNA_LoopCloser | |
| set_atom_level_domain_map(core::pose::toolbox::AtomLevelDomainMapCOP setting) | protocols::rna::movers::RNA_LoopCloser | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_verbose(bool const setting) | protocols::rna::movers::RNA_LoopCloser | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| verbose_ | protocols::rna::movers::RNA_LoopCloser | private |
1.8.7