protocols::stepwise::monte_carlo::mover::TransientCutpointHandler Class Reference

#include <TransientCutpointHandler.hh>

Inheritance diagram for protocols::stepwise::monte_carlo::mover::TransientCutpointHandler:

Public Member Functions
	TransientCutpointHandler (core::Size const sample_res)
	TransientCutpointHandler (core::Size const sample_suite, core::Size const cutpoint_suite, bool const change_foldtree=true)
	~TransientCutpointHandler () override
void	put_in_cutpoints (core::pose::Pose &pose)
void	take_out_cutpoints (core::pose::Pose &pose)
void	set_minimize_res (utility::vector1< core::Size > const &setting)
void	set_move_jump_points_away (bool const &setting)
bool	move_jump_points_away () const

Private Member Functions
void	prepare_fold_tree_for_erraser (core::pose::Pose &pose)

Private Attributes
core::Size const	sample_suite_
core::Size const	cutpoint_suite_
bool	move_jump_points_away_
utility::vector1< core::Size >	fixed_res_
utility::vector1< core::Size >	minimize_res_
core::Size	jump_start_
core::Size	jump_end_
bool	change_foldtree_

Constructor & Destructor Documentation

protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::TransientCutpointHandler

(

core::Size const

sample_res

)

protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::TransientCutpointHandler	(	core::Size const	sample_suite,
		core::Size const	cutpoint_suite,
		bool const	change_foldtree = true
	)

protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::~TransientCutpointHandler ( )

overridedefault

Member Function Documentation

bool protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::move_jump_points_away ( ) const

inline

References move_jump_points_away_.

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::prepare_fold_tree_for_erraser ( core::pose::Pose &  pose )

private

References cutpoint_suite_, core::chemical::rna::default_jump_atom(), core::pose::Pose::fold_tree(), jump_end_, jump_start_, minimize_res_, move_jump_points_away_, core::pose::Pose::residue_type(), sample_suite_, core::pose::Pose::size(), and protocols::TR().

Referenced by put_in_cutpoints().

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::put_in_cutpoints

(

core::pose::Pose &

pose

)

References core::pose::rna::apply_suite_torsion_info(), core::id::BB, change_foldtree_, core::pose::correctly_add_cutpoint_variants(), cutpoint_suite_, core::pose::rna::get_suite_torsion_info(), prepare_fold_tree_for_erraser(), and viewer_pose.

Referenced by protocols::stepwise::monte_carlo::mover::ResampleMover::apply().

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::set_minimize_res ( utility::vector1< core::Size > const &  setting )

inline

References minimize_res_.

Referenced by protocols::stepwise::monte_carlo::mover::ResampleMover::apply().

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::set_move_jump_points_away ( bool const &  setting )

inline

References move_jump_points_away_.

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::take_out_cutpoints

(

core::pose::Pose &

pose

)

References change_foldtree_, core::chemical::CUTPOINT_LOWER, cutpoint_suite_, core::chemical::CUTPOINT_UPPER, core::kinematics::FoldTree::delete_jump_and_intervening_cutpoint(), jump_end_, jump_start_, core::pose::remove_variant_type_from_pose_residue(), and viewer_pose.

Referenced by protocols::stepwise::monte_carlo::mover::ResampleMover::apply().

Member Data Documentation

bool protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::change_foldtree_

private

Referenced by put_in_cutpoints(), and take_out_cutpoints().

core::Size const protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::cutpoint_suite_

private

Referenced by prepare_fold_tree_for_erraser(), put_in_cutpoints(), and take_out_cutpoints().

utility::vector1< core::Size > protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::fixed_res_

private

core::Size protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::jump_end_

private

Referenced by prepare_fold_tree_for_erraser(), and take_out_cutpoints().

core::Size protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::jump_start_

private

Referenced by prepare_fold_tree_for_erraser(), and take_out_cutpoints().

utility::vector1< core::Size > protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::minimize_res_

private

Referenced by prepare_fold_tree_for_erraser(), and set_minimize_res().

bool protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::move_jump_points_away_

private

Referenced by move_jump_points_away(), prepare_fold_tree_for_erraser(), and set_move_jump_points_away().

core::Size const protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::sample_suite_

private

Referenced by prepare_fold_tree_for_erraser().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/monte_carlo/mover/TransientCutpointHandler.hh
• src/protocols/stepwise/monte_carlo/mover/TransientCutpointHandler.cc