#include <AtomTypeDatabaseIO.hh>

Inheritance diagram for core::chemical::AtomTypeDatabaseIO:

Public Member Functions
	AtomTypeDatabaseIO ()

	~AtomTypeDatabaseIO () override

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

void	initialize (utility::sql_database::sessionOP db_session) const
	write the schema More...

void	write_atom_type_set_to_database (chemical::AtomTypeSet const &atom_type_set, utility::sql_database::sessionOP db_session) const

utility::vector1< std::string >	get_all_atom_types_in_database (utility::sql_database::sessionOP db_session) const

Private Member Functions
void	write_atom_types_table_schema (utility::sql_database::sessionOP db_session) const

void	write_atom_type_property_values_table_schema (utility::sql_database::sessionOP db_session) const

void	write_atom_type_properties_table_schema (utility::sql_database::sessionOP db_session) const

void	write_atom_type_extra_parameters_table_schema (utility::sql_database::sessionOP db_session) const

void	write_atom_type_table (std::string const &atom_type_set_name, AtomType const &atom_type, utility::sql_database::sessionOP db_session) const

void	write_atom_type_properties_table (std::string const &atom_type_set_name, AtomType const &atom_type, utility::sql_database::sessionOP db_session) const

void	write_atom_type_extra_parameters_table (AtomTypeSet const &atom_type_set, AtomType const &atom_type, utility::sql_database::sessionOP db_session) const

Constructor & Destructor Documentation

core::chemical::AtomTypeDatabaseIO::AtomTypeDatabaseIO ( )

default

core::chemical::AtomTypeDatabaseIO::~AtomTypeDatabaseIO ( )

overridedefault

Member Function Documentation

vector1< string > core::chemical::AtomTypeDatabaseIO::get_all_atom_types_in_database ( utility::sql_database::sessionOP db_session ) const

void core::chemical::AtomTypeDatabaseIO::initialize ( utility::sql_database::sessionOP db_session ) const

write the schema

References write_schema_to_db().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_extra_parameters_table	(	AtomTypeSet const &	atom_type_set,
		AtomType const &	atom_type,
		utility::sql_database::sessionOP	db_session
	)		const

private

References core::chemical::AtomType::extra_parameter(), core::chemical::AtomTypeSet::extra_parameter_indices(), core::chemical::AtomTypeSet::name(), and core::chemical::AtomType::name().

Referenced by write_atom_type_set_to_database().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_extra_parameters_table_schema ( utility::sql_database::sessionOP db_session ) const

private

Referenced by write_schema_to_db().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_properties_table	(	std::string const &	atom_type_set_name,
		AtomType const &	atom_type,
		utility::sql_database::sessionOP	db_session
	)		const

private

References core::chemical::AtomType::get_all_properties(), core::chemical::AtomType::name(), and update_ResidueType_enum_files::properties.

Referenced by write_atom_type_set_to_database().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_properties_table_schema ( utility::sql_database::sessionOP db_session ) const

private

Referenced by write_schema_to_db().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_property_values_table_schema ( utility::sql_database::sessionOP db_session ) const

private

Referenced by write_schema_to_db().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_set_to_database	(	chemical::AtomTypeSet const &	atom_type_set,
		utility::sql_database::sessionOP	db_session
	)		const

References core::chemical::AtomTypeSet::n_atomtypes(), core::chemical::AtomTypeSet::name(), write_atom_type_extra_parameters_table(), write_atom_type_properties_table(), and write_atom_type_table().

Referenced by protocols::features::AtomTypesFeatures::report_features().

void core::chemical::AtomTypeDatabaseIO::write_atom_type_table	(	std::string const &	atom_type_set_name,
		AtomType const &	atom_type,
		utility::sql_database::sessionOP	db_session
	)		const

private

References core::chemical::AtomType::element(), core::chemical::AtomType::lj_radius(), core::chemical::AtomType::lj_wdepth(), core::chemical::AtomType::lk_dgfree(), core::chemical::AtomType::lk_lambda(), core::chemical::AtomType::lk_volume(), and core::chemical::AtomType::name().

Referenced by write_atom_type_set_to_database().

void core::chemical::AtomTypeDatabaseIO::write_atom_types_table_schema ( utility::sql_database::sessionOP db_session ) const

private

Referenced by write_schema_to_db().

void core::chemical::AtomTypeDatabaseIO::write_schema_to_db ( utility::sql_database::sessionOP db_session ) const

generate the table schemas and write them to the database

References write_atom_type_extra_parameters_table_schema(), write_atom_type_properties_table_schema(), write_atom_type_property_values_table_schema(), and write_atom_types_table_schema().

Referenced by initialize(), and protocols::features::AtomTypesFeatures::write_schema_to_db().

The documentation for this class was generated from the following files:

src/core/chemical/AtomTypeDatabaseIO.hh
src/core/chemical/AtomTypeDatabaseIO.cc

Public Member Functions

Private Member Functions

Constructor & Destructor Documentation

Member Function Documentation