protocols::task_operations::PruneBuriedUnsatsOperation Class Reference

#include <PruneBuriedUnsatsOperation.hh>

Inheritance diagram for protocols::task_operations::PruneBuriedUnsatsOperation:

Public Member Functions
	PruneBuriedUnsatsOperation ()
	default constructor More...
	PruneBuriedUnsatsOperation (PruneBuriedUnsatsOperation const &other)
	copy constructor More...
	~PruneBuriedUnsatsOperation () override
	destructor More...
PruneBuriedUnsatsOperation &	operator= (PruneBuriedUnsatsOperation const &other)
core::pack::task::operation::TaskOperationOP	clone () const override
	make clone More...
void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	apply More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
bool	allow_even_trades () const
core::Real	atomic_depth_probe_radius () const
core::Real	atomic_depth_resolution () const
core::Real	atomic_depth_cutoff () const
core::Real	minimum_hbond_energy () const
void	allow_even_trades (bool allow_even_trades)
void	atomic_depth_probe_radius (core::Real atomic_depth_probe_radius)
void	atomic_depth_resolution (core::Real atomic_depth_resolution)
void	atomic_depth_cutoff (core::Real atomic_depth_cutoff)
void	minimum_hbond_energy (core::Real minimum_hbond_energy)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
bool	allow_even_trades_
	Allow residues that satisfy an unsat and create a new unsatisfiable one. More...
core::Real	atomic_depth_probe_radius_
core::Real	atomic_depth_resolution_
core::Real	atomic_depth_cutoff_
core::Real	minimum_hbond_energy_
core::scoring::ScoreFunctionOP	scorefxn_sc_
core::scoring::ScoreFunctionOP	scorefxn_bb_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Constructor & Destructor Documentation

protocols::task_operations::PruneBuriedUnsatsOperation::PruneBuriedUnsatsOperation

(

)

default constructor

References core::scoring::hbond_bb_sc, core::scoring::hbond_lr_bb, core::scoring::methods::EnergyMethodOptions::hbond_options(), core::scoring::hbond_sc, core::scoring::hbond_sr_bb, scorefxn_bb_, scorefxn_sc_, and core::scoring::hbonds::HBondOptions::use_hb_env_dep().

protocols::task_operations::PruneBuriedUnsatsOperation::PruneBuriedUnsatsOperation

(

PruneBuriedUnsatsOperation const &

other

)

copy constructor

default constructor

protocols::task_operations::PruneBuriedUnsatsOperation::~PruneBuriedUnsatsOperation ( )

overridedefault

destructor

Member Function Documentation

bool protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades ( ) const

inline

References allow_even_trades_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades ( bool  allow_even_trades )

inline

References allow_even_trades(), and allow_even_trades_.

Referenced by allow_even_trades().

void protocols::task_operations::PruneBuriedUnsatsOperation::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

overridevirtual

apply

Implements core::pack::task::operation::TaskOperation.

References allow_even_trades_, core::pack::task::PackerTask::append_rotamersets_operation(), atomic_depth_cutoff_, atomic_depth_probe_radius_, atomic_depth_resolution_, core::pose::symmetry::is_symmetric(), minimum_hbond_energy_, scorefxn_bb_, and scorefxn_sc_.

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff ( ) const

inline

References atomic_depth_cutoff_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff ( core::Real  atomic_depth_cutoff )

inline

References atomic_depth_cutoff(), and atomic_depth_cutoff_.

Referenced by atomic_depth_cutoff().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius ( ) const

inline

References atomic_depth_probe_radius_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius ( core::Real  atomic_depth_probe_radius )

inline

References atomic_depth_probe_radius(), and atomic_depth_probe_radius_.

Referenced by atomic_depth_probe_radius().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution ( ) const

inline

References atomic_depth_resolution_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution ( core::Real  atomic_depth_resolution )

inline

References atomic_depth_resolution(), and atomic_depth_resolution_.

Referenced by atomic_depth_resolution().

core::pack::task::operation::TaskOperationOP protocols::task_operations::PruneBuriedUnsatsOperation::clone ( ) const

overridevirtual

make clone

clone

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::PruneBuriedUnsatsOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::PruneBuriedUnsatsOperationCreator::keyname(), and provide_xml_schema().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy ( ) const

inline

References minimum_hbond_energy_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy ( core::Real  minimum_hbond_energy )

inline

References minimum_hbond_energy(), and minimum_hbond_energy_.

Referenced by minimum_hbond_energy().

PruneBuriedUnsatsOperation & protocols::task_operations::PruneBuriedUnsatsOperation::operator=

(

PruneBuriedUnsatsOperation const &

other

)

References allow_even_trades_, atomic_depth_cutoff_, atomic_depth_probe_radius_, atomic_depth_resolution_, minimum_hbond_energy_, scorefxn_bb_, and scorefxn_sc_.

void protocols::task_operations::PruneBuriedUnsatsOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_even_trades(), atomic_depth_cutoff(), atomic_depth_probe_radius(), atomic_depth_resolution(), and minimum_hbond_energy().

void protocols::task_operations::PruneBuriedUnsatsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::PruneBuriedUnsatsOperationCreator::provide_xml_schema().

Member Data Documentation

bool protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades_

private

Allow residues that satisfy an unsat and create a new unsatisfiable one.

Referenced by allow_even_trades(), apply(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff_

private

Referenced by apply(), atomic_depth_cutoff(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius_

private

Referenced by apply(), atomic_depth_probe_radius(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution_

private

Referenced by apply(), atomic_depth_resolution(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy_

private

Referenced by apply(), minimum_hbond_energy(), and operator=().

core::scoring::ScoreFunctionOP protocols::task_operations::PruneBuriedUnsatsOperation::scorefxn_bb_

private

Referenced by apply(), operator=(), and PruneBuriedUnsatsOperation().

core::scoring::ScoreFunctionOP protocols::task_operations::PruneBuriedUnsatsOperation::scorefxn_sc_

private

Referenced by apply(), operator=(), and PruneBuriedUnsatsOperation().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/PruneBuriedUnsatsOperation.hh
• src/protocols/task_operations/PruneBuriedUnsatsOperation.cc