GeneralizedKIC.cc File Reference

Kinematic closure of arbitrary segments that could go through side-chains (e.g. disulfides). More...

#include <protocols/generalized_kinematic_closure/GeneralizedKIC.hh>
#include <protocols/generalized_kinematic_closure/GeneralizedKICCreator.hh>
#include <protocols/generalized_kinematic_closure/util.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <utility/exit.hh>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <core/types.hh>
#include <utility/tag/Tag.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/scoring/Energies.hh>
#include <core/pose/util.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/fixedsizearray1.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzVector.io.hh>
#include <numeric/kinematic_closure/bridgeObjects.hh>
#include <numeric/kinematic_closure/kinematic_closure_helpers.hh>
#include <numeric/conversions.hh>
#include <utility/excn/Exceptions.hh>
#include <core/pose/Pose.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::generalized_kinematic_closure

Functions
static basic::Tracer	protocols::generalized_kinematic_closure::TR ("protocols.generalized_kinematic_closure.GeneralizedKIC")
std::string	protocols::generalized_kinematic_closure::gen_kic_subelement_mangler (std::string const &element_name)
std::string	protocols::generalized_kinematic_closure::gen_kic_sample_cis_subelement_mangler (std::string const &element_name)
std::string	protocols::generalized_kinematic_closure::gen_kic_add_pert_subelement_mangler (std::string const &element_name)
std::string	protocols::generalized_kinematic_closure::gen_kic_add_filter_subelement_mangler (std::string const &element_name)

Detailed Description

Kinematic closure of arbitrary segments that could go through side-chains (e.g. disulfides).

Author

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu)