protocols::denovo_design::constraints::FileConstraintGenerator Class Reference

#include <FileConstraintGenerator.hh>

Inheritance diagram for protocols::denovo_design::constraints::FileConstraintGenerator:

Public Member Functions
	FileConstraintGenerator ()
	FileConstraintGenerator (std::string const &filename)
	~FileConstraintGenerator () override
protocols::constraint_generator::ConstraintGeneratorOP	clone () const override
core::scoring::constraints::ConstraintCOPs	apply (core::pose::Pose const &pose) const override
	generates constraints and adds them to the pose More...
void	set_cstfile (std::string const &filename)
Public Member Functions inherited from protocols::constraint_generator::ConstraintGenerator
	ConstraintGenerator (std::string const &class_name)
	~ConstraintGenerator () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &citations) const
	Provide citations to the passed CitationCollectionList. This allows the constraint generator to provide citations for itself and for any modules that it invokes. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
	parses XML tag – calls protected parse_tag() function More...
std::string const &	id () const
void	set_id (std::string const &id)
std::string const &	class_name () const

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	class_name ()

Protected Member Functions
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
	called by parse_my_tag – should not be used directly More...
std::string	clean_constraint_string (std::string const &cst_str) const

Private Attributes
std::string	filename_

Constructor & Destructor Documentation

protocols::denovo_design::constraints::FileConstraintGenerator::FileConstraintGenerator

(

)

protocols::denovo_design::constraints::FileConstraintGenerator::FileConstraintGenerator

(

std::string const &

filename

)

protocols::denovo_design::constraints::FileConstraintGenerator::~FileConstraintGenerator ( )

overridedefault

Member Function Documentation

core::scoring::constraints::ConstraintCOPs protocols::denovo_design::constraints::FileConstraintGenerator::apply ( core::pose::Pose const &  pose ) const

overridevirtual

generates constraints and adds them to the pose

Implements protocols::constraint_generator::ConstraintGenerator.

References clean_constraint_string(), filename_, protocols::denovo_design::components::StructureDataFactory::get_from_const_pose(), protocols::denovo_design::components::StructureDataFactory::has_cached_data(), protocols::denovo_design::components::StructureData::substitute_variables(), and protocols::TR().

std::string protocols::denovo_design::constraints::FileConstraintGenerator::class_name ( )

static

References protocols::denovo_design::constraints::FileConstraintGeneratorCreator::constraint_generator_name().

Referenced by provide_xml_schema().

std::string protocols::denovo_design::constraints::FileConstraintGenerator::clean_constraint_string ( std::string const &  cst_str ) const

protected

Referenced by apply().

protocols::constraint_generator::ConstraintGeneratorOP protocols::denovo_design::constraints::FileConstraintGenerator::clone ( ) const

overridevirtual

Implements protocols::constraint_generator::ConstraintGenerator.

void protocols::denovo_design::constraints::FileConstraintGenerator::parse_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

overrideprotectedvirtual

called by parse_my_tag – should not be used directly

Implements protocols::constraint_generator::ConstraintGenerator.

References filename_, and set_cstfile().

void protocols::denovo_design::constraints::FileConstraintGenerator::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::constraint_generator::ConstraintGeneratorFactory::xsd_constraint_generator_type_definition_w_attributes().

Referenced by protocols::denovo_design::constraints::FileConstraintGeneratorCreator::provide_xml_schema().

void protocols::denovo_design::constraints::FileConstraintGenerator::set_cstfile

(

std::string const &

filename

)

References protocols::abinitio::filename(), and filename_.

Referenced by parse_tag().

Member Data Documentation

std::string protocols::denovo_design::constraints::FileConstraintGenerator::filename_

private

Referenced by apply(), parse_tag(), and set_cstfile().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/constraints/FileConstraintGenerator.hh
• src/protocols/denovo_design/constraints/FileConstraintGenerator.cc