core::conformation::symmetry::SymDof Class Reference

#include <SymDof.hh>

Public Member Functions
	SymDof ()
	constructor More...
	SymDof (SymDof const &src)
	copy constructor More...
SymDof &	operator= (SymDof const &src)
	~SymDof ()
void	add_dof_from_string (utility::vector1< std::string > dof_string)
void	read (std::string dof_line)
bool	allow_dof (int df) const
void	set_allow_dof (int df, bool newval)
bool	has_dof ()
core::Real	range1_lower (int df) const
core::Real	range1_upper (int df) const
core::Real	range2_lower (int df) const
core::Real	range2_upper (int df) const
bool	has_range1 (int df) const
bool	has_range2 (int df) const
bool	has_range1_lower (int df) const
bool	has_range1_upper (int df) const
bool	has_range2_lower (int df) const
bool	has_range2_upper (int df) const
bool	range2_is_bound (int df) const
int	jump_direction (int df) const

Private Attributes
utility::vector1< bool >	range2_is_bound_
utility::vector1< bool >	allowed_dof_jumps_
utility::vector1< Real >	lower_range_dof_jumps1_
utility::vector1< Real >	upper_range_dof_jumps1_
utility::vector1< Real >	lower_range_dof_jumps2_
utility::vector1< Real >	upper_range_dof_jumps2_
utility::vector1< bool >	has_range1_lower_
utility::vector1< bool >	has_range1_upper_
utility::vector1< bool >	has_range2_lower_
utility::vector1< bool >	has_range2_upper_
utility::vector1< int >	jump_dir_

Friends
std::ostream &	operator<< (std::ostream &s, const SymDof &dof)
bool	operator== (SymDof const &a, SymDof const &b)
bool	operator!= (SymDof const &a, SymDof const &b)

Constructor & Destructor Documentation

core::conformation::symmetry::SymDof::SymDof

(

)

constructor

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, range2_is_bound_, upper_range_dof_jumps1_, and upper_range_dof_jumps2_.

core::conformation::symmetry::SymDof::SymDof ( SymDof const &  src )

default

copy constructor

core::conformation::symmetry::SymDof::~SymDof ( )

default

Member Function Documentation

void core::conformation::symmetry::SymDof::add_dof_from_string

(

utility::vector1< std::string >

dof_string

)

References read().

Referenced by core::conformation::symmetry::SymmData::read_symmetry_data_from_stream().

bool core::conformation::symmetry::SymDof::allow_dof

(

int

df

)

const

References allowed_dof_jumps_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), protocols::rigid::RigidBodyDofTransMover::apply(), protocols::rigid::RigidBodyDofPerturbMover::apply(), has_dof(), core::pose::symmetry::make_symmetric_movemap(), core::conformation::symmetry::operator<<(), protocols::rigid::RigidBodyDofRandomTransMover::RigidBodyDofRandomTransMover(), protocols::rigid::RigidBodyDofSeqTransMover::RigidBodyDofSeqTransMover(), protocols::rigid::RigidBodyDofTransMover::RigidBodyDofTransMover(), protocols::symmetry::SymmetrySlider::setup(), and core::conformation::symmetry::SymmData::show().

bool core::conformation::symmetry::SymDof::has_dof

(

)

References allow_dof(), core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

bool core::conformation::symmetry::SymDof::has_range1

(

int

df

)

const

References has_range1_lower_, and has_range1_upper_.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply().

bool core::conformation::symmetry::SymDof::has_range1_lower

(

int

df

)

const

References has_range1_lower_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply().

bool core::conformation::symmetry::SymDof::has_range1_upper

(

int

df

)

const

References has_range1_upper_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

bool core::conformation::symmetry::SymDof::has_range2

(

int

df

)

const

References has_range2_lower_, and has_range2_upper_.

bool core::conformation::symmetry::SymDof::has_range2_lower

(

int

df

)

const

References has_range2_lower_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofTransMover::apply(), and protocols::rigid::RigidBodyDofPerturbMover::apply().

bool core::conformation::symmetry::SymDof::has_range2_upper

(

int

df

)

const

References has_range2_upper_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

int core::conformation::symmetry::SymDof::jump_direction

(

int

df

)

const

References jump_dir_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), protocols::rigid::RigidBodyDofPerturbMover::apply(), core::conformation::symmetry::operator<<(), protocols::rigid::RigidBodyDofTransMover::RigidBodyDofTransMover(), and core::conformation::symmetry::SymmData::show().

SymDof & core::conformation::symmetry::SymDof::operator=

(

SymDof const &

src

)

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, range2_is_bound_, upper_range_dof_jumps1_, and upper_range_dof_jumps2_.

core::Real core::conformation::symmetry::SymDof::range1_lower

(

int

df

)

const

References lower_range_dof_jumps1_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

core::Real core::conformation::symmetry::SymDof::range1_upper

(

int

df

)

const

References upper_range_dof_jumps1_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

bool core::conformation::symmetry::SymDof::range2_is_bound

(

int

df

)

const

References range2_is_bound_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofTransMover::apply(), and protocols::rigid::RigidBodyDofPerturbMover::apply().

core::Real core::conformation::symmetry::SymDof::range2_lower

(

int

df

)

const

References lower_range_dof_jumps2_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofTransMover::apply(), protocols::rigid::RigidBodyDofPerturbMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

core::Real core::conformation::symmetry::SymDof::range2_upper

(

int

df

)

const

References upper_range_dof_jumps2_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofTransMover::apply(), protocols::rigid::RigidBodyDofPerturbMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

void core::conformation::symmetry::SymDof::read

(

std::string

dof_line

)

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, range2_is_bound_, protocols::forge::methods::replace(), protocols::sparta::split(), upper_range_dof_jumps1_, upper_range_dof_jumps2_, core::conformation::symmetry::X_ANGLE_DOF, core::conformation::symmetry::X_DOF, core::conformation::symmetry::Y_ANGLE_DOF, core::conformation::symmetry::Y_DOF, core::conformation::symmetry::Z_ANGLE_DOF, and core::conformation::symmetry::Z_DOF.

Referenced by add_dof_from_string().

void core::conformation::symmetry::SymDof::set_allow_dof	(	int	df,
		bool	newval
	)

References allowed_dof_jumps_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Friends And Related Function Documentation

bool operator!= ( SymDof const &  a, SymDof const &  b  )

friend

std::ostream& operator<< ( std::ostream &  s, const SymDof &  dof  )

friend

bool operator== ( SymDof const &  a, SymDof const &  b  )

friend

Member Data Documentation

utility::vector1< bool > core::conformation::symmetry::SymDof::allowed_dof_jumps_

private

Referenced by allow_dof(), operator=(), core::conformation::symmetry::operator==(), read(), set_allow_dof(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range1_lower_

private

Referenced by has_range1(), has_range1_lower(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range1_upper_

private

Referenced by has_range1(), has_range1_upper(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range2_lower_

private

Referenced by has_range2(), has_range2_lower(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range2_upper_

private

Referenced by has_range2(), has_range2_upper(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< int > core::conformation::symmetry::SymDof::jump_dir_

private

Referenced by jump_direction(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::lower_range_dof_jumps1_

private

Referenced by operator=(), core::conformation::symmetry::operator==(), range1_lower(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::lower_range_dof_jumps2_

private

Referenced by operator=(), core::conformation::symmetry::operator==(), range2_lower(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::range2_is_bound_

private

Referenced by operator=(), range2_is_bound(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::upper_range_dof_jumps1_

private

Referenced by operator=(), core::conformation::symmetry::operator==(), range1_upper(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::upper_range_dof_jumps2_

private

Referenced by operator=(), core::conformation::symmetry::operator==(), range2_upper(), read(), and SymDof().

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The documentation for this class was generated from the following files:

• src/core/conformation/symmetry/SymDof.hh
• src/core/conformation/symmetry/SymDof.cc