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core::sequence::CompassScoringScheme Member List

This is the complete list of members for core::sequence::CompassScoringScheme, including all inherited members.

clone() const overridecore::sequence::CompassScoringSchemeinlinevirtual
CompassScoringScheme(Real open=-4, Real extend=-1)core::sequence::CompassScoringSchemeinline
gap_extend() const core::sequence::ScoringSchemevirtual
gap_extend(Real const gap_extend)core::sequence::ScoringScheme
gap_open() const core::sequence::ScoringSchemevirtual
gap_open(Real const gap_open)core::sequence::ScoringScheme
is_good(Real const &num)core::sequence::ScoringScheme
read_data(utility::io::izstream &)core::sequence::ScoringSchemevirtual
read_from_file(utility::file::FileName const &)core::sequence::ScoringSchemevirtual
score(SequenceOP seq1, SequenceOP seq2, Size pos1, Size pos2) overridecore::sequence::CompassScoringSchemevirtual
ScoringScheme()core::sequence::ScoringScheme
type() const core::sequence::ScoringScheme
type(std::string new_type)core::sequence::ScoringScheme
unimplemented_method_error(std::string const &method_name) const core::sequence::ScoringScheme
~CompassScoringScheme() override=defaultcore::sequence::CompassScoringScheme
~ScoringScheme() overridecore::sequence::ScoringScheme
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