core::energy_methods::RNA_PartitionEnergy Member List

This is the complete list of members for core::energy_methods::RNA_PartitionEnergy, including all inherited members.

atomic_interaction_cutoff() const	core::scoring::methods::WholeStructureEnergy	inlinevirtual
calculate_energy(utility::vector1< core::conformation::ResidueCOP > const &resvect, utility::vector1< core::Size > const &rotamer_ids, core::Size const substitution_position=0) const override	core::energy_methods::RNA_PartitionEnergy	virtual
clean_up_residuearrayannealableenergy_after_packing(core::pose::Pose &pose)	core::scoring::annealing::ResidueArrayAnnealableEnergy	virtual
clone() const override	core::energy_methods::RNA_PartitionEnergy	virtual
commit_considered_substitution()	core::scoring::annealing::ResidueArrayAnnealableEnergy	virtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
exec_cmd(std::string const &cmd, std::string &cmd_result) const	core::energy_methods::RNA_PartitionEnergy	private
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override	core::energy_methods::RNA_PartitionEnergy	virtual
get_partition_score(std::string const &global_sequence, Real &partition_score) const	core::energy_methods::RNA_PartitionEnergy	private
get_partition_score_from_cache(std::string const &global_sequence, Real &partition_score) const	core::energy_methods::RNA_PartitionEnergy	private
get_score_from_sequences(std::string const &native_sequence, std::string const &current_sequence, Real &score) const	core::energy_methods::RNA_PartitionEnergy	private
global_mapping_	core::energy_methods::RNA_PartitionEnergy	private
indicate_required_context_graphs(utility::vector1< bool > &) const override	core::energy_methods::RNA_PartitionEnergy	inlinevirtual
method_type() const override	core::scoring::methods::WholeStructureEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
native_sequence_	core::energy_methods::RNA_PartitionEnergy	private
parent typedef	core::scoring::methods::WholeStructureEnergy
parent1 typedef	core::energy_methods::RNA_PartitionEnergy
parent2 typedef	core::energy_methods::RNA_PartitionEnergy
partition_cache_	core::energy_methods::RNA_PartitionEnergy	mutableprivate
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::scoring::methods::EnergyMethod	virtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
res_list_	core::energy_methods::RNA_PartitionEnergy	private
ResidueArrayAnnealableEnergy()	core::scoring::annealing::ResidueArrayAnnealableEnergy
ResidueArrayAnnealableEnergy(ResidueArrayAnnealableEnergy const &src)	core::scoring::annealing::ResidueArrayAnnealableEnergy
RNA_PartitionEnergy()	core::energy_methods::RNA_PartitionEnergy
RNA_PartitionEnergy(RNA_PartitionEnergy const &src)	core::energy_methods::RNA_PartitionEnergy
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
set_up_residuearrayannealableenergy_for_packing(pose::Pose &pose, core::pack::rotamer_set::RotamerSets const &rotamersets, scoring::ScoreFunction const &) override	core::energy_methods::RNA_PartitionEnergy	virtual
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
version() const override	core::energy_methods::RNA_PartitionEnergy	privatevirtual
WholeStructureEnergy(EnergyMethodCreatorOP)	core::scoring::methods::WholeStructureEnergy
~ResidueArrayAnnealableEnergy()	core::scoring::annealing::ResidueArrayAnnealableEnergy	virtual
~WholeStructureEnergy() override	core::scoring::methods::WholeStructureEnergy	inline