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2021.16
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Rosetta
2021.16
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This is the complete list of members for core::scoring::Ramachandran2B, including all inherited members.
| AA typedef | core::scoring::Ramachandran2B | |
| binw_ | core::scoring::Ramachandran2B | privatestatic |
| draw_random_phi_psi_from_cdf(utility::vector1< Real > const &cdf, Real &phi, Real &psi) const | core::scoring::Ramachandran2B | private |
| eval_rama_score_all(Pose &pose, ScoreFunction const &scorefxn) const | core::scoring::Ramachandran2B | |
| eval_rama_score_residue(AA const res_aa, Real const phi, Real const psi) const | core::scoring::Ramachandran2B | |
| eval_rama_score_residue(conformation::Residue const &res, chemical::AA const left_aa, chemical::AA const right_aa, Real &rama, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| eval_rama_score_residue(Real phi, Real psi, chemical::AA const res, chemical::AA const left_aa, chemical::AA const right_aa) const | core::scoring::Ramachandran2B | |
| eval_rama_score_residue(Real phi, Real psi, chemical::AA const res, chemical::AA const left_aa, chemical::AA const right_aa, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| eval_rama_score_residue(conformation::Residue const &res, Real &rama, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| eval_rama_score_residue(AA const res_aa, Real const phi, Real const psi, Real &rama, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| get_entries_per_torsion_bin_left(AA const left_aa, AA const pos_aa, std::map< conformation::ppo_torsion_bin, core::Size > &tb_frequencies) const | core::scoring::Ramachandran2B | |
| get_entries_per_torsion_bin_right(AA const pos_aa, AA const right_aa, std::map< conformation::ppo_torsion_bin, core::Size > &tb_frequencies) const | core::scoring::Ramachandran2B | |
| IdealizeRamaEnergy(Real const phi, Real const psi, Real &rama, Real &drama_dphi, Real &drama_dpsi, Real const entropy, ObjexxFCL::FArray2A< Real > const &rama_for_res) const | core::scoring::Ramachandran2B | |
| init_rama_sampling_table(const conformation::ppo_torsion_bin torsion_bin, ObjexxFCL::FArray4D< Real > const &ram_probability, ObjexxFCL::FArray2D< utility::vector1< Real > > &cdf, ObjexxFCL::FArray3D< utility::vector1< Real > > &cdf_by_torsion_bin, ObjexxFCL::FArray3D< Size > &n_valid_pp_bins_by_ppo_torbin) const | core::scoring::Ramachandran2B | private |
| initialize_rama_sampling_tables() | core::scoring::Ramachandran2B | private |
| left_cdf(core::chemical::AA aa_left, core::chemical::AA aa_center) const | core::scoring::Ramachandran2B | |
| left_cdf_ | core::scoring::Ramachandran2B | private |
| left_cdf_by_torsion_bin_ | core::scoring::Ramachandran2B | private |
| left_cdf_for_torsion_bin(chemical::AA aa_left, chemical::AA aa_center, conformation::ppo_torsion_bin) const | core::scoring::Ramachandran2B | |
| left_ram_probabil_ | core::scoring::Ramachandran2B | private |
| minimum_sampling_probability() const | core::scoring::Ramachandran2B | |
| n_aa_ | core::scoring::Ramachandran2B | privatestatic |
| n_phi_ | core::scoring::Ramachandran2B | privatestatic |
| n_phi_bins() const | core::scoring::Ramachandran2B | |
| n_psi_ | core::scoring::Ramachandran2B | privatestatic |
| n_psi_bins() const | core::scoring::Ramachandran2B | |
| n_valid_left_pp_bins_by_ppo_torbin_ | core::scoring::Ramachandran2B | private |
| n_valid_right_pp_bins_by_ppo_torbin_ | core::scoring::Ramachandran2B | private |
| nullaa | core::scoring::Ramachandran2B | privatestatic |
| Pose typedef | core::scoring::Ramachandran2B | |
| ram_energ_ | core::scoring::Ramachandran2B | private |
| ram_energ_left_ | core::scoring::Ramachandran2B | private |
| ram_energ_right_ | core::scoring::Ramachandran2B | private |
| ram_entropy_ | core::scoring::Ramachandran2B | private |
| ram_entropy_left_ | core::scoring::Ramachandran2B | private |
| ram_entropy_right_ | core::scoring::Ramachandran2B | private |
| rama_bin_probability_left(core::chemical::AA aa_left, core::chemical::AA aa_center, Real phi, Real psi) const | core::scoring::Ramachandran2B | |
| rama_bin_probability_right(core::chemical::AA aa_center, core::chemical::AA aa_right, Real phi, Real psi) const | core::scoring::Ramachandran2B | |
| rama_sampling_thold_ | core::scoring::Ramachandran2B | privatestatic |
| rama_score_limit_ | core::scoring::Ramachandran2B | private |
| Ramachandran2B() | core::scoring::Ramachandran2B | |
| RamaE(conformation::Residue const &rsd) const | core::scoring::Ramachandran2B | |
| RamaE(conformation::Residue const &rsd, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| RamaE(Real phi, Real psi, chemical::AA const &rsd, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| RamaE_Lower(conformation::Residue const &rsd, chemical::AA const &neighbor) const | core::scoring::Ramachandran2B | |
| RamaE_Lower(conformation::Residue const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| RamaE_Lower(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor) const | core::scoring::Ramachandran2B | |
| RamaE_Lower(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| RamaE_Upper(conformation::Residue const &rsd, chemical::AA const &neighbor) const | core::scoring::Ramachandran2B | |
| RamaE_Upper(conformation::Residue const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| RamaE_Upper(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor) const | core::scoring::Ramachandran2B | |
| RamaE_Upper(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) const | core::scoring::Ramachandran2B | |
| random_phipsi_from_rama_by_torsion_bin_left(AA const left_aa, AA const pos_aa, Real &phi, Real &psi, conformation::ppo_torsion_bin const torsion_bin) const | core::scoring::Ramachandran2B | |
| random_phipsi_from_rama_by_torsion_bin_right(AA const pos_aa, AA const right_aa, Real &phi, Real &psi, conformation::ppo_torsion_bin const torsion_bin) const | core::scoring::Ramachandran2B | |
| random_phipsi_from_rama_left(AA const left_aa, AA const pos_aa, Real &phi, Real &psi) const | core::scoring::Ramachandran2B | |
| random_phipsi_from_rama_right(AA const pos_aa, AA const right_aa, Real &phi, Real &psi) const | core::scoring::Ramachandran2B | |
| read_rama() | core::scoring::Ramachandran2B | private |
| right_cdf(core::chemical::AA aa_center, core::chemical::AA aa_right) const | core::scoring::Ramachandran2B | |
| right_cdf_ | core::scoring::Ramachandran2B | private |
| right_cdf_by_torsion_bin_ | core::scoring::Ramachandran2B | private |
| right_cdf_for_torsion_bin(chemical::AA aa_center, chemical::AA aa_right, conformation::ppo_torsion_bin) const | core::scoring::Ramachandran2B | |
| right_ram_probabil_ | core::scoring::Ramachandran2B | private |
| write_rama_score_all(Pose const &pose) const | core::scoring::Ramachandran2B | |
| ~Ramachandran2B() override | core::scoring::Ramachandran2B |
1.8.7