| cached_scores_id_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| chunk_coordinates_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| fill_coords(core::pose::Pose const &, ObjexxFCL::FArray2_double &, core::Size, std::string) | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| frag_pos_coordinates_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| fragment_coordinates_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| fragment_pose_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| FragmentAllAtomCrmsd(core::Size, core::Real, bool, std::string const &, core::pose::PoseOP) | protocols::frag_picker::scores::FragmentAllAtomCrmsd | |
| FragmentAllAtomCrmsd(core::Size, core::Real, bool, std::string const &, utility::vector1< utility::vector1< core::Real > > const &) | protocols::frag_picker::scores::FragmentAllAtomCrmsd | |
| FragmentScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| query_sequence_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| reference_coordinates_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| reference_pose_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) override | protocols::frag_picker::scores::FragmentAllAtomCrmsd | virtual |
| set_id(core::Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| set_min_allowed_score(core::Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| total_ref_resids_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| weights_ | protocols::frag_picker::scores::FragmentAllAtomCrmsd | private |
| ~FragmentAllAtomCrmsd() override | protocols::frag_picker::scores::FragmentAllAtomCrmsd | |