| align_to_current_phore_match(core::pose::Pose &pose, ConstraintInfo const &recinfo, utility::vector1< core::Size > const &ligids, utility::vector1< std::pair< core::Size, core::Size > > &marked_pairs, utility::vector1< core::Size > &SrcPriorIDs, utility::vector1< core::Size > &TgtPriorIDs) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | |
| append_metal_vsites(core::pose::Pose const &pose, core::Size const &ires, utility::vector1< std::pair< core::Real, core::Size > > &Vacceptor_sort, bool report=false) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| atmids_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| atomid(core::Size i) const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| build_Dmtrx() | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| ConstraintInfo() | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| ConstraintInfo(core::pose::Pose const &pose, utility::vector1< core::Size > const &ligids, bool use_pharmacophore, bool report_phore_info=false) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| ConstraintInfo(core::pose::Pose const &pose, GridScorerOP gridscore, bool const simple=false) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| coord(core::Size i) const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| coords_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| current_phore_match_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| debug_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| define_active_virtual_sites(core::pose::Pose const &pose, GridScorerOP gridscore, utility::vector1< std::pair< core::Real, core::Size > > &Vdonor_sort, utility::vector1< std::pair< core::Real, core::Size > > &Vacceptor_sort, core::Size const nneigh_cut_for_exposed_sc, core::Size const nneigh_cut_for_exposed_bb, bool const report=false) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| define_all_ligand_phores(core::Size const minsize, bool report_phore_info) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| define_receptor_phores(utility::vector1< std::pair< core::Real, core::Size > > &Vdonor_sort, utility::vector1< std::pair< core::Real, core::Size > > &Vacceptor_sort, core::Size const nmin=10, bool report_phore_info=false) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| Dmtrx_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| init_from_ligand(core::pose::Pose const &pose, utility::vector1< core::Size > const &ligids) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | |
| init_from_ligand_pharmacophore(core::pose::Pose const &pose, utility::vector1< core::Size > const &ligids, bool report_phore_info) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | |
| init_from_receptor(core::pose::Pose const &pose, GridScorerOP gridscore, bool const simple) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | |
| is_ligand_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| limit() | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| limit_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| map_phores(utility::vector1< Pharmacophore > const &receptor_phores, bool const update, core::Size const nmax=100) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | |
| n_match_per_ligand_motif_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| n_phore_match() const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| natoms() const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| NNEIGH_CUT_FOR_EXPOSED_BB | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| NNEIGH_CUT_FOR_EXPOSED_SC | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| pharmacophores_defined() const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| phore_dcut_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| phore_match_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| phore_overlaps_with_existing(Pharmacophore const &phore_i, core::Size &jphore) const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| phores() const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| phores_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| polar_scale() | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| polar_scale_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| properties(core::Size i) const | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| properties_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| RECEPTOR_PHORE_MAX | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| RECEPTOR_PHORE_MIN | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| select_phore_match(core::Size const run_index) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | |
| set_default() | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| update_ligand_coord(core::pose::Pose const &pose) | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
| weight() | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | inline |
| weight_ | protocols::ligand_docking::ga_ligand_dock::ConstraintInfo | private |
1.8.7