Rosetta: protocols::frag_picker::quota::QuotaSelector Class Reference

selects a given number of fragments using a quota scheme More...

#include <QuotaSelector.hh>

Inheritance diagram for protocols::frag_picker::quota::QuotaSelector:

Inheritance graph

Public Member Functions
	QuotaSelector (core::Size, core::Size, QuotaCollectorOP)
	Constructor sets the desired number of fragments. More...

	~QuotaSelector () override

void	select_fragments (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out) override
	Selects desired number of fragments from a given candidates. More...

Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
	FragmentSelectingRule (core::Size frags_per_pos)
	Constructor sets the desired number of fragments. More...

core::Size	frags_per_pos ()
	Says how many fragments will be selected for each position in a query sequence. More...

	~FragmentSelectingRule () override=default

Protected Member Functions
core::Size	round (core::Real x)

core::Size	next_from_pool (ScoredCandidatesVector1 const &, core::Size recently_taken, std::set< core::Size > &in_use)

void	push_the_limits (utility::vector1< core::Size > &q_limits, core::Size target_total)

void	push_the_limits_to_the_winner (utility::vector1< core::Size > &q_limits, core::Size target_total)

void	push_the_limits (utility::vector1< core::Size > &, core::Size, utility::vector1< core::Real > &)

virtual void	select_fragments_200 (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)

virtual void	select_fragments_25_200 (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)

Protected Attributes
QuotaCollectorOP	collector_

core::Size	q_pos_

Private Attributes
utility::vector1< std::string >	tags_

std::map< std::string, core::Size >	tag_map_

Detailed Description

selects a given number of fragments using a quota scheme

Constructor & Destructor Documentation

protocols::frag_picker::quota::QuotaSelector::QuotaSelector	(	core::Size	frags_per_pos,
		core::Size	pos_in_query,
		QuotaCollectorOP	collector
	)

Constructor sets the desired number of fragments.

References collector_, q_pos_, and protocols::frag_picker::quota::trQuotaSelector().

protocols::frag_picker::quota::QuotaSelector::~QuotaSelector ( )

inlineoverride

Member Function Documentation

core::Size protocols::frag_picker::quota::QuotaSelector::next_from_pool	(	ScoredCandidatesVector1 const &	pool,
		core::Size	recently_taken,
		std::set< core::Size > &	in_use
	)

protected

References protocols::frag_picker::quota::trQuotaSelector().

Referenced by select_fragments_200(), and select_fragments_25_200().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits	(	utility::vector1< core::Size > &	q_limits,
		core::Size	target_total
	)

protected

References protocols::frag_picker::quota::mysorter_biggest_first, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector().

Referenced by select_fragments_200(), and select_fragments_25_200().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits	(	utility::vector1< core::Size > &	q_limits,
		core::Size	target_total,
		utility::vector1< core::Real > &	q_fractions
	)

protected

References protocols::frag_picker::quota::mysorter_missing_fraction_biggest_first, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner	(	utility::vector1< core::Size > &	q_limits,
		core::Size	target_total
	)

protected

References protocols::frag_picker::quota::mysorter_biggest_first, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector().

core::Size protocols::frag_picker::quota::QuotaSelector::round ( core::Real x )

inlineprotected

void protocols::frag_picker::quota::QuotaSelector::select_fragments	(	ScoredCandidatesVector1 const &	in,
		ScoredCandidatesVector1 &	out
	)

inlineoverridevirtual

Selects desired number of fragments from a given candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

References select_fragments_25_200().

Referenced by protocols::frag_picker::FragmentPicker::quota_protocol().

void protocols::frag_picker::quota::QuotaSelector::select_fragments_200	(	ScoredCandidatesVector1 const &	in,
		ScoredCandidatesVector1 &	out
	)

protectedvirtual

References collector_, protocols::frag_picker::FragmentSelectingRule::frags_per_pos(), next_from_pool(), push_the_limits(), q_pos_, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector().

void protocols::frag_picker::quota::QuotaSelector::select_fragments_25_200	(	ScoredCandidatesVector1 const &	in,
		ScoredCandidatesVector1 &	out
	)

protectedvirtual

References collector_, protocols::frag_picker::FragmentSelectingRule::frags_per_pos(), protocols::frag_picker::QuotaDebug::log(), protocols::frag_picker::FragmentPicker::log_200_, protocols::frag_picker::FragmentPicker::log_25_, next_from_pool(), push_the_limits(), q_pos_, protocols::frag_picker::QuotaDebug::tag_map_, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector().

Referenced by select_fragments().

Member Data Documentation

QuotaCollectorOP protocols::frag_picker::quota::QuotaSelector::collector_

protected

Referenced by QuotaSelector(), select_fragments_200(), and select_fragments_25_200().

core::Size protocols::frag_picker::quota::QuotaSelector::q_pos_

protected

Referenced by QuotaSelector(), select_fragments_200(), and select_fragments_25_200().

std::map<std::string,core::Size> protocols::frag_picker::quota::QuotaSelector::tag_map_

private

utility::vector1<std::string> protocols::frag_picker::quota::QuotaSelector::tags_

private

The documentation for this class was generated from the following files:

src/protocols/frag_picker/quota/QuotaSelector.hh
src/protocols/frag_picker/quota/QuotaSelector.cc