protocols::denovo_design::task_operations::ConsensusLoopDatabase Class Reference

#include <ConsensusLoopDesignOperation.hh>

Inheritance diagram for protocols::denovo_design::task_operations::ConsensusLoopDatabase:

Public Types
typedef std::string	Abego
typedef std::map< Abego, LoopAAs >	AbegoToLoopAAsMap
typedef std::map < SurroundingSS, AbegoToLoopAAsMap >	SurroundingSSMap

Public Member Functions
	ConsensusLoopDatabase ()
virtual	~ConsensusLoopDatabase ()
void	set_frequency (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid, char const aa, AAFrequencyCOP const frequency)
AAFrequencies const &	frequencies (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid) const
AAFrequency const &	frequency (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid, char const aa) const
bool	has_frequencies (SurroundingSS const &surrounding_ss, Abego const &abego) const
bool	has_frequencies (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid) const
bool	has_frequency (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid, char const aa) const

Private Member Functions
void	read_db ()

Private Attributes
SurroundingSSMap	ss_map_

Member Typedef Documentation

typedef std::string protocols::denovo_design::task_operations::ConsensusLoopDatabase::Abego

typedef std::map< Abego, LoopAAs > protocols::denovo_design::task_operations::ConsensusLoopDatabase::AbegoToLoopAAsMap

typedef std::map< SurroundingSS, AbegoToLoopAAsMap > protocols::denovo_design::task_operations::ConsensusLoopDatabase::SurroundingSSMap

Constructor & Destructor Documentation

protocols::denovo_design::task_operations::ConsensusLoopDatabase::ConsensusLoopDatabase

(

)

References read_db().

protocols::denovo_design::task_operations::ConsensusLoopDatabase::~ConsensusLoopDatabase ( )

virtualdefault

Member Function Documentation

AAFrequencies const & protocols::denovo_design::task_operations::ConsensusLoopDatabase::frequencies	(	SurroundingSS const &	surrounding_ss,
		Abego const &	abego,
		core::Size const	loop_resid
	)		const

References ss_map_.

Referenced by protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::aa_frequencies(), frequency(), and has_frequency().

AAFrequency const & protocols::denovo_design::task_operations::ConsensusLoopDatabase::frequency	(	SurroundingSS const &	surrounding_ss,
		Abego const &	abego,
		core::Size const	loop_resid,
		char const	aa
	)		const

References frequencies(), and protocols::denovo_design::task_operations::AAFrequencies::frequency().

Referenced by read_db().

bool protocols::denovo_design::task_operations::ConsensusLoopDatabase::has_frequencies	(	SurroundingSS const &	surrounding_ss,
		Abego const &	abego
	)		const

References ss_map_.

Referenced by has_frequency().

bool protocols::denovo_design::task_operations::ConsensusLoopDatabase::has_frequencies	(	SurroundingSS const &	surrounding_ss,
		Abego const &	abego,
		core::Size const	loop_resid
	)		const

References ss_map_.

bool protocols::denovo_design::task_operations::ConsensusLoopDatabase::has_frequency	(	SurroundingSS const &	surrounding_ss,
		Abego const &	abego,
		core::Size const	loop_resid,
		char const	aa
	)		const

References frequencies(), has_frequencies(), and protocols::denovo_design::task_operations::AAFrequencies::has_frequency().

void protocols::denovo_design::task_operations::ConsensusLoopDatabase::read_db ( )

private

References protocols::cluster::calibur::aa, frequency(), protocols::hybridization::score, and set_frequency().

Referenced by ConsensusLoopDatabase().

void protocols::denovo_design::task_operations::ConsensusLoopDatabase::set_frequency	(	SurroundingSS const &	surrounding_ss,
		Abego const &	abego,
		core::Size const	loop_resid,
		char const	aa,
		AAFrequencyCOP const	frequency
	)

References ss_map_.

Referenced by read_db().

Member Data Documentation

SurroundingSSMap protocols::denovo_design::task_operations::ConsensusLoopDatabase::ss_map_

private

Referenced by frequencies(), has_frequencies(), and set_frequency().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/task_operations/ConsensusLoopDesignOperation.hh
• src/protocols/denovo_design/task_operations/ConsensusLoopDesignOperation.cc