SelectResiduesByLayer.cc File Reference

select residues depending on layer: core, boundary, and surface The layer of residues are defined by accessible sufrace area of CB + mainchain, or by the number of sidechains within a cone along the CA-CB vector. More...

#include <core/select/util/SelectResiduesByLayer.hh>
#include <core/id/AtomID_Map.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <basic/Tracer.hh>
#include <core/select/util/burial_utilities.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <core/chemical/AtomType.hh>
#include <core/pose/util.hh>
#include <fstream>
#include <core/pose/util.tmpl.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::select
	core::select::util

Functions
static basic::Tracer	TR ("core.select.util.SelectResiduesByLayer")

Detailed Description

select residues depending on layer: core, boundary, and surface The layer of residues are defined by accessible sufrace area of CB + mainchain, or by the number of sidechains within a cone along the CA-CB vector.

Author

Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.uw.ed.nosp@m.u )

Gabe Rocklin (sidechain neighbour selection)

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu – moving this class to core and refactoring for noncanonicals)

Function Documentation

static basic::Tracer TR ( "core.select.util.SelectResiduesByLayer"  )

static

Referenced by core::select::util::SelectResiduesByLayer::compute(), and core::select::util::SelectResiduesByLayer::SelectResiduesByLayer().