protocols::simple_filters::MotifScoreFilter Class Reference

#include <MotifScoreFilter.hh>

Inheritance diagram for protocols::simple_filters::MotifScoreFilter:

Public Member Functions
	MotifScoreFilter ()
	~MotifScoreFilter () override=default
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::scoring::motif::MotifHashManager *	mman_
core::Real	score_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::MotifScoreFilter::MotifScoreFilter

(

)

protocols::simple_filters::MotifScoreFilter::~MotifScoreFilter ( )

overridedefault

Member Function Documentation

bool protocols::simple_filters::MotifScoreFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References protocols::hybridization::score, and protocols::simple_filters::TR().

std::string protocols::simple_filters::MotifScoreFilter::class_name ( )

static

filters::FilterOP protocols::simple_filters::MotifScoreFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Real protocols::simple_filters::MotifScoreFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::simple_filters::dssp(), core::scoring::dssp::Dssp::dssp_reduced(), core::pose::motif::get_backbone_reference_frame(), core::scoring::dssp::Dssp::get_dssp_secstruct(), core::conformation::Residue::name1(), core::pose::Pose::residue(), protocols::hybridization::score, core::pose::Pose::size(), and core::conformation::Residue::xyz().

filters::FilterOP protocols::simple_filters::MotifScoreFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

std::string protocols::simple_filters::MotifScoreFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::MotifScoreFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::MotifScoreFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::filters::xsd_type_definition_w_attributes().

void protocols::simple_filters::MotifScoreFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References protocols::hybridization::score.

core::Real protocols::simple_filters::MotifScoreFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References protocols::hybridization::score.

Member Data Documentation

core::scoring::motif::MotifHashManager* protocols::simple_filters::MotifScoreFilter::mman_

private

core::Real protocols::simple_filters::MotifScoreFilter::score_threshold_

private

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/MotifScoreFilter.hh
• src/protocols/simple_filters/MotifScoreFilter.cc