EnergyBasedClusteringProtocol.hh File Reference

Performs the work done by the energy_based_clustering app. Uses an energy-biased cookie-cutter approach to cluster a large number of structures without generating an all-by-all RMSD matrix. More...

#include <protocols/energy_based_clustering/EnergyBasedClusteringProtocol.fwd.hh>
#include <protocols/energy_based_clustering/EnergyBasedClusteringOptions.hh>
#include <protocols/energy_based_clustering/EnergyBasedClusteringTests.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/id/NamedAtomID.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <protocols/cyclic_peptide/CycpepSymmetryFilter.fwd.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/VirtualBase.hh>
#include <utility/vector1.fwd.hh>
#include <numeric/xyzVector.fwd.hh>
#include <set>

Classes
class	protocols::energy_based_clustering::EnergyBasedClusteringProtocol
	Performs the work done by the energy_based_clustering app. Uses an energy-biased cookie-cutter approach to cluster a large number of structures without generating an all-by-all RMSD matrix. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::energy_based_clustering

Detailed Description

Performs the work done by the energy_based_clustering app. Uses an energy-biased cookie-cutter approach to cluster a large number of structures without generating an all-by-all RMSD matrix.

Author

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu)