core::pack::annealer Namespace Reference

Classes
class	AnnealerFactory
class	AnnealerObserver
class	DebuggingAnnealer
class	FASTERAnnealer
class	FixbbCoupledRotamerSimAnnealer
class	FixbbLinkingRotamerSimAnnealer
class	FixbbPwatSimAnnealer
class	FixbbSimAnnealer
struct	Key
struct	KeyHasher
class	MultiCoolAnnealer
struct	PointDwell
class	RotamerAssigningAnnealer
struct	RotSub
struct	SeqSymmAnnealerSetup
class	SequenceSymmetricAnnealer
class	SimAnnealerBase
class	SmartFixbbSimAnnealer
struct	Value

Typedefs
using	AnnealerObserverOP = utility::pointer::shared_ptr< AnnealerObserver >
using	AnnealerObserverCOP = utility::pointer::shared_ptr< AnnealerObserver const >
typedef utility::pointer::shared_ptr < DebuggingAnnealer >	DebuggingAnnealerOP
typedef utility::pointer::shared_ptr < FASTERAnnealer >	FASTERAnnealerOP
typedef utility::pointer::shared_ptr < FASTERAnnealer const >	FASTERAnnealerCOP
typedef utility::pointer::shared_ptr < FixbbPwatSimAnnealer >	FixbbPwatSimAnnealerOP
typedef utility::pointer::shared_ptr < FixbbSimAnnealer >	FixbbSimAnnealerOP
typedef utility::pointer::shared_ptr < RotamerAssigningAnnealer >	RotamerAssigningAnnealerOP
typedef utility::pointer::shared_ptr < SequenceSymmetricAnnealer >	SequenceSymmetricAnnealerOP
typedef utility::pointer::shared_ptr < std::unordered_set< char > >	CharSetOP
typedef utility::pointer::shared_ptr < SimAnnealerBase >	SimAnnealerBaseOP
typedef utility::pointer::shared_ptr < SmartFixbbSimAnnealer >	SmartFixbbSimAnnealerOP

Functions
static basic::Tracer	TR ("core.pack.annealer.AnnealerFactory")
static basic::Tracer	TR ("core.pack.annealer.FixbbCoupledRotamerSimAnnealer", basic::t_info)
static basic::Tracer	TR ("core.pack.annealer.FixbbLinkingRotamerSimAnnealer", basic::t_info)
static basic::Tracer	TR ("core.pack.annealer.MultiCoolAnnealer")
core::Size	process_linked_res_set (std::unordered_set< core::Size > &set, utility::vector1< utility::vector1< Size > > const &corresponding_mress_for_mres, utility::vector1< bool > &processed)
void	register_unpublished_author_info ()
core::Real	expected_output_for_model_name (std::string const &model_name)

Typedef Documentation

using core::pack::annealer::AnnealerObserverCOP = typedef utility::pointer::shared_ptr< AnnealerObserver const >

using core::pack::annealer::AnnealerObserverOP = typedef utility::pointer::shared_ptr< AnnealerObserver >

typedef utility::pointer::shared_ptr< std::unordered_set< char > > core::pack::annealer::CharSetOP

typedef utility::pointer::shared_ptr< DebuggingAnnealer > core::pack::annealer::DebuggingAnnealerOP

typedef utility::pointer::shared_ptr< FASTERAnnealer const > core::pack::annealer::FASTERAnnealerCOP

typedef utility::pointer::shared_ptr< FASTERAnnealer > core::pack::annealer::FASTERAnnealerOP

typedef utility::pointer::shared_ptr< FixbbPwatSimAnnealer > core::pack::annealer::FixbbPwatSimAnnealerOP

typedef utility::pointer::shared_ptr< FixbbSimAnnealer > core::pack::annealer::FixbbSimAnnealerOP

typedef utility::pointer::shared_ptr< RotamerAssigningAnnealer > core::pack::annealer::RotamerAssigningAnnealerOP

typedef utility::pointer::shared_ptr< SequenceSymmetricAnnealer > core::pack::annealer::SequenceSymmetricAnnealerOP

typedef utility::pointer::shared_ptr< SimAnnealerBase > core::pack::annealer::SimAnnealerBaseOP

typedef utility::pointer::shared_ptr< SmartFixbbSimAnnealer > core::pack::annealer::SmartFixbbSimAnnealerOP

Function Documentation

core::Real core::pack::annealer::expected_output_for_model_name

(

std::string const &

model_name

)

Referenced by core::pack::annealer::SmartFixbbSimAnnealer::perform_validation_test().

core::Size core::pack::annealer::process_linked_res_set	(	std::unordered_set< core::Size > &	set,
		utility::vector1< utility::vector1< Size > > const &	corresponding_mress_for_mres,
		utility::vector1< bool > &	processed
	)

Referenced by core::pack::annealer::SequenceSymmetricAnnealer::create_corresponding_mress_for_mres().

void core::pack::annealer::register_unpublished_author_info

(

)

static basic::Tracer core::pack::annealer::TR ( "core.pack.annealer.FixbbLinkingRotamerSimAnnealer"  , basic::t_info    )

static

static basic::Tracer core::pack::annealer::TR ( "core.pack.annealer.AnnealerFactory"  )

static

Referenced by core::pack::annealer::SequenceSymmetricAnnealer::print_linked_residues(), core::pack::annealer::FixbbSimAnnealer::run(), core::pack::annealer::FixbbLinkingRotamerSimAnnealer::run(), core::pack::annealer::FixbbCoupledRotamerSimAnnealer::run(), core::pack::annealer::SequenceSymmetricAnnealer::search_pose_for_residue_subsets(), core::pack::annealer::FixbbLinkingRotamerSimAnnealer::setup_rotamer_links(), and core::pack::annealer::SequenceSymmetricAnnealer::update_shared_residue_map().

static basic::Tracer core::pack::annealer::TR ( "core.pack.annealer.FixbbCoupledRotamerSimAnnealer"  , basic::t_info    )

static

static basic::Tracer core::pack::annealer::TR ( "core.pack.annealer.MultiCoolAnnealer"  )

static