core::chemical::gasteiger::PossibleAtomTypesForAtom Member List

This is the complete list of members for core::chemical::gasteiger::PossibleAtomTypesForAtom, including all inherited members.

AddAromaticAtomType(GasteigerAtomTypeDataCOP ATOM_TYPE, const int DESIRED_CHARGE)	core::chemical::gasteiger::PossibleAtomTypesForAtom
AddAtomType(GasteigerAtomTypeDataCOP ATOM_TYPE)	core::chemical::gasteiger::PossibleAtomTypesForAtom
CouldHaveHybridization(const GasteigerAtomTypeData::HybridOrbitalType HYBRID) const	core::chemical::gasteiger::PossibleAtomTypesForAtom
CountUnsaturatedNeighbors(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD) const	core::chemical::gasteiger::PossibleAtomTypesForAtom
CreateAtomicEnvironmentToTypesMap(const bool IN_AROMATIC_RING, GasteigerAtomTypeSetCOP GASTEIGER_ATOM_TYPE_SET)	core::chemical::gasteiger::PossibleAtomTypesForAtom	privatestatic
Finalize(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
Finalize()	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeAromatic(const int DESIRED_CHARGE)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeNitrogenSingleDouble(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeNitrogenThreeSingle(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeNitrogenTwoSingle(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeOxygenSingleDouble(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeOxygenThreeSingle(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeOxygenTwoSingle(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD)	core::chemical::gasteiger::PossibleAtomTypesForAtom
FinalizeUnhybridized()	core::chemical::gasteiger::PossibleAtomTypesForAtom
FindPossibleAtomTypesForAtom(GasteigerAtomTypeSetCOP GASTEIGER_ATOM_TYPE_SET, const Element &ELEMENT, const core::Size NUMBER_ELECTRONS_IN_BONDS, const core::Size NUMBER_BONDS, const int SUSPECTED_CHARGE, const bool IN_AROMATIC_RING)	core::chemical::gasteiger::PossibleAtomTypesForAtom	static
gasteiger_atom_type_set(GasteigerAtomTypeSetCOP GASTEIGER_ATOM_TYPE_SET)	core::chemical::gasteiger::PossibleAtomTypesForAtom
gasteiger_atom_type_set_	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
GetMostStableType() const	core::chemical::gasteiger::PossibleAtomTypesForAtom
GetNumberPossibleTypes() const	core::chemical::gasteiger::PossibleAtomTypesForAtom
hybridization_rank(GasteigerAtomTypeData::HybridOrbitalType const hybrid)	core::chemical::gasteiger::PossibleAtomTypesForAtom
IsBondedToAHalogen(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD) const	core::chemical::gasteiger::PossibleAtomTypesForAtom
IsUnsaturated(const core::chemical::RealResidueGraph &graph, const core::chemical::RealResidueVD &atomVD) const	core::chemical::gasteiger::PossibleAtomTypesForAtom
m_AtomTypesByDecreasingStability	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
m_FinalizeFunction	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
m_NumberAtomTypesWithHybridization	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
m_NumberConjugatedTypes	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
PossibleAtomTypesForAtom()	core::chemical::gasteiger::PossibleAtomTypesForAtom
RemoveHybridization(const GasteigerAtomTypeData::HybridOrbitalType HYBRID)	core::chemical::gasteiger::PossibleAtomTypesForAtom
s_atomic_env_outside_arom_ring_to_types_map	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
s_element_bonds_in_arom_ring_to_types_map	core::chemical::gasteiger::PossibleAtomTypesForAtom	private
SetToType(GasteigerAtomTypeDataCOP ATOM_TYPE)	core::chemical::gasteiger::PossibleAtomTypesForAtom