core::pack::task::operation::ExtraRotamersGeneric Class Reference

#include <TaskOperations.hh>

Inheritance diagram for core::pack::task::operation::ExtraRotamersGeneric:

Public Types
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	ExtraRotamersGeneric ()
	~ExtraRotamersGeneric () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
void	apply (pose::Pose const &, PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	ex1 (bool value)
void	ex2 (bool value)
void	ex3 (bool value)
void	ex4 (bool value)
void	ex1aro (bool value)
void	ex2aro (bool value)
void	ex1aro_exposed (bool value)
void	ex2aro_exposed (bool value)
void	ex1_sample_level (ExtraRotSample value)
void	ex2_sample_level (ExtraRotSample value)
void	ex3_sample_level (ExtraRotSample value)
void	ex4_sample_level (ExtraRotSample value)
void	ex1aro_sample_level (ExtraRotSample value)
void	ex2aro_sample_level (ExtraRotSample value)
void	ex1aro_exposed_sample_level (ExtraRotSample value)
void	ex2aro_exposed_sample_level (ExtraRotSample value)
void	exdna_sample_level (ExtraRotSample value)
void	extrachi_cutoff (Size value)
ExtraRotamerSamplingData const &	sampling_data () const
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
ExtraRotamerSamplingData	sampling_data_

Detailed Description

control the extra chi rotamers for all residues

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::ExtraRotamersGeneric::parent

Constructor & Destructor Documentation

core::pack::task::operation::ExtraRotamersGeneric::ExtraRotamersGeneric

(

)

core::pack::task::operation::ExtraRotamersGeneric::~ExtraRotamersGeneric ( )

overridedefault

Member Function Documentation

void core::pack::task::operation::ExtraRotamersGeneric::apply ( pose::Pose const &  , PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::pack::task::PackerTask::nonconst_residue_task(), sampling_data_, core::pack::task::operation::set_rotamer_sampling_data_for_RLT(), and core::pack::task::PackerTask::total_residue().

TaskOperationOP core::pack::task::operation::ExtraRotamersGeneric::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

void core::pack::task::operation::ExtraRotamersGeneric::ex1

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex1_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex1_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex1_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex1aro

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex1aro_exposed

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_exposed_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex1aro_exposed_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_exposed_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex1aro_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex2

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex2_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex2_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex2_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex2aro

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex2aro_exposed

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_exposed_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex2aro_exposed_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_exposed_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex2aro_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex3

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex3_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex3_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex3_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex4

(

bool

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex4_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::ex4_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::ex4_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::exdna_sample_level

(

ExtraRotSample

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::exdna_sample_level_, and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::extrachi_cutoff

(

Size

value

)

References core::pack::task::operation::ExtraRotamerSamplingData::extrachi_cutoff_, and sampling_data_.

std::string core::pack::task::operation::ExtraRotamersGeneric::keyname ( )

static

Referenced by core::pack::task::operation::ExtraRotamersGenericCreator::keyname(), and provide_xml_schema().

void core::pack::task::operation::ExtraRotamersGeneric::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References core::pack::task::operation::parse_rotamer_sampling_data(), and sampling_data_.

void core::pack::task::operation::ExtraRotamersGeneric::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), core::pack::task::operation::rotamer_sampling_data_xml_schema_attributes(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by core::pack::task::operation::ExtraRotamersGenericCreator::provide_xml_schema().

ExtraRotamerSamplingData const & core::pack::task::operation::ExtraRotamersGeneric::sampling_data

(

)

const

References sampling_data_.

Member Data Documentation

ExtraRotamerSamplingData core::pack::task::operation::ExtraRotamersGeneric::sampling_data_

private

Referenced by apply(), ex1(), ex1_sample_level(), ex1aro(), ex1aro_exposed(), ex1aro_exposed_sample_level(), ex1aro_sample_level(), ex2(), ex2_sample_level(), ex2aro(), ex2aro_exposed(), ex2aro_exposed_sample_level(), ex2aro_sample_level(), ex3(), ex3_sample_level(), ex4(), ex4_sample_level(), exdna_sample_level(), extrachi_cutoff(), parse_tag(), and sampling_data().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/TaskOperations.hh
• src/core/pack/task/operation/TaskOperations.cc