| cen_dist10_pad | core::scoring::MembranePotential | private |
| cen_dist10_pad_hinv | core::scoring::MembranePotential | private |
| cen_dist10_pad_minus | core::scoring::MembranePotential | private |
| cen_dist10_pad_plus | core::scoring::MembranePotential | private |
| cen_dist12_pad | core::scoring::MembranePotential | private |
| cen_dist12_pad_hinv | core::scoring::MembranePotential | private |
| cen_dist12_pad_minus | core::scoring::MembranePotential | private |
| cen_dist5_pad | core::scoring::MembranePotential | private |
| cen_dist5_pad_hinv | core::scoring::MembranePotential | private |
| cen_dist5_pad_minus | core::scoring::MembranePotential | private |
| cen_dist5_pad_plus | core::scoring::MembranePotential | private |
| cen_dist7_pad | core::scoring::MembranePotential | private |
| cen_dist7_pad_hinv | core::scoring::MembranePotential | private |
| cen_dist7_pad_minus | core::scoring::MembranePotential | private |
| cen_dist7_pad_plus | core::scoring::MembranePotential | private |
| cenlist_from_pose(pose::Pose const &) | core::scoring::EnvPairPotential | static |
| check_spanning(pose::Pose const &pose, Vector const &normal, Vector const ¢er) const | core::scoring::MembranePotential | private |
| compute_centroid_environment(pose::Pose &pose) const | core::scoring::EnvPairPotential | |
| compute_membrane_embedding(pose::Pose &pose) const | core::scoring::MembranePotential | |
| EnvPairPotential() | core::scoring::EnvPairPotential | |
| evaluate_cbeta(pose::Pose const &pose, conformation::Residue const &rsd, Real &membrane_cb_score) const | core::scoring::MembranePotential | |
| evaluate_env(pose::Pose const &pose, conformation::Residue const &rsd, Real const MembraneDepth, Real &membrane_env_score) const | core::scoring::MembranePotential | |
| evaluate_env(pose::Pose const &pose, conformation::Residue const &rsd, Real &membrane_env_score) const | core::scoring::MembranePotential | |
| evaluate_env_and_cbeta_scores(pose::Pose const &pose, conformation::Residue const &rsd, Real &env_score, Real &cb_score6, Real &cb_score12) const | core::scoring::EnvPairPotential | |
| evaluate_pair(pose::Pose const &pose, conformation::Residue const &rsd1, conformation::Residue const &rsd2, Real const cendist, Real &membrane_pair_score) const | core::scoring::MembranePotential | |
| evaluate_pair_and_cenpack_score(conformation::Residue const &rsd1, conformation::Residue const &rsd2, Real const cendist, Real &pair_contribution, Real &cenpack_contribution) const | core::scoring::EnvPairPotential | |
| finalize(pose::Pose &pose) const | core::scoring::MembranePotential | virtual |
| init_membrane_center_normal(pose::Pose const &pose, Vector &normal, Vector ¢er) const | core::scoring::MembranePotential | |
| mem_cbeta_2TM_den12_ | core::scoring::MembranePotential | private |
| mem_cbeta_2TM_den6_ | core::scoring::MembranePotential | private |
| mem_cbeta_4TM_den12_ | core::scoring::MembranePotential | private |
| mem_cbeta_4TM_den6_ | core::scoring::MembranePotential | private |
| mem_cbeta_den12_ | core::scoring::MembranePotential | private |
| mem_cbeta_den6_ | core::scoring::MembranePotential | private |
| mem_env_log10_ | core::scoring::MembranePotential | private |
| mem_env_log6_ | core::scoring::MembranePotential | private |
| mem_pair_log_ | core::scoring::MembranePotential | private |
| memb_center_search_ | core::scoring::MembranePotential | private |
| memb_normal_search_ | core::scoring::MembranePotential | private |
| Membed_init() const | core::scoring::MembranePotential | inline |
| Membed_init_ | core::scoring::MembranePotential | private |
| membrane_center_magnitude_ | core::scoring::MembranePotential | private |
| membrane_center_max_delta_ | core::scoring::MembranePotential | private |
| membrane_normal_cycles_ | core::scoring::MembranePotential | private |
| membrane_normal_delta_angle_ | core::scoring::MembranePotential | private |
| membrane_normal_magnitude_ | core::scoring::MembranePotential | private |
| membrane_normal_max_angle_ | core::scoring::MembranePotential | private |
| membrane_normal_start_angle_ | core::scoring::MembranePotential | private |
| MembranePotential() | core::scoring::MembranePotential | |
| Menv_penalties() const | core::scoring::MembranePotential | inline |
| Menv_penalties_ | core::scoring::MembranePotential | private |
| no_interpolate_Mpair_ | core::scoring::MembranePotential | private |
| non_helix_in_membrane_penalty(pose::Pose const &pose, Real &non_helix_in_membrane_penalty) const | core::scoring::MembranePotential | |
| non_helix_in_membrane_penalty(pose::Pose const &pose, Vector const &normal, Vector const ¢er, Real &non_helix_in_membrane_penalty) const | core::scoring::MembranePotential | |
| nonconst_cenlist_from_pose(pose::Pose &) | core::scoring::EnvPairPotential | static |
| rigid_perturb_vector(Vector &v, Real const &std_dev) const | core::scoring::MembranePotential | private |
| rot_perturb_vector(Vector &v, Real const &std_dev) const | core::scoring::MembranePotential | private |
| score_normal_center(pose::Pose const &pose, Vector const &normal, Vector const ¢er, Real &score) const | core::scoring::MembranePotential | private |
| search_memb_center(Vector &c, Vector &n, Real const &delta) const | core::scoring::MembranePotential | private |
| search_memb_normal(Vector &n, Real const &alpha, Real const &theta) const | core::scoring::MembranePotential | private |
| smooth_move_frac_ | core::scoring::MembranePotential | private |
| termini_penalty(pose::Pose const &pose, Real &termini_penalty) const | core::scoring::MembranePotential | |
| termini_penalty(pose::Pose const &pose, Vector const &normal, Vector const ¢er, Real &termin_penalty) const | core::scoring::MembranePotential | |
| tm_projection_penalty(pose::Pose const &pose, Real &tm_proj) const | core::scoring::MembranePotential | |
| tm_projection_penalty(pose::Pose const &pose, Vector const &normal, Vector const ¢er, Real &tm_proj) const | core::scoring::MembranePotential | |
1.8.7