core::fragment::SecstructSRFD Class Reference

#include <SecstructSRFD.hh>

Inheritance diagram for core::fragment::SecstructSRFD:

Public Member Functions
	SecstructSRFD (char secstruct= 'X', char sequence= 'X')
SingleResidueFragDataOP	clone () const override
SingleResidueFragDataOP	create () const override
	create a new instance of this object More...
char	secstruct () const override
	get secstruct for this position More...
void	set_secstruct (char const ss)
bool	apply (pose::Pose &, Size seq_pos) const override
	insert fragment_data into pose at position seq_pos More...
bool	apply (kinematics::MoveMap const &, pose::Pose &pose, Size const seqpos) const override
	apply secondary structure fragment data to the pose, movemap has no effect More...
bool	apply_ss (std::string &, Size seq_pos) const override
	insert fragment_data sec-struct into ss-string at position seq_pos More...
bool	steal (pose::Pose const &, Size seq_pos) override
	insert fragment_data into pose at position seq_pos More...
bool	is_compatible (SingleResidueFragData const &) const override
	check weather SRFD applies to same dofs and is of same type More...
bool	is_applicable (kinematics::MoveMap const &, Size seq_pos) const override
	check whether dofs can be moved More...
void	show (std::ostream &out) const override
void	read_data (std::istream &in) override
	Default implementation: noop. More...
std::string	type () const override
Public Member Functions inherited from core::fragment::SingleResidueFragData
	~SingleResidueFragData () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
	SingleResidueFragData (char sequence)
	SingleResidueFragData ()
virtual bool	apply (pose::Pose &, Size const intra_frame_pos, Frame const &) const
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ); More...
virtual bool	apply (kinematics::MoveMap const &movemap, pose::Pose &pose, Size const intra_frame_pos, Frame const &frame) const
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ) for dofs that are allowed to move in the MoveMap More...
virtual bool	apply_ss (std::string &, Size intra_frame_pos, Frame const &) const
	insert fragment_data sec-struct into ss-string at position seq_pos More...
virtual bool	steal (pose::Pose const &, Size intra_frame_pos, Frame const &)
	insert fragment_data into pose at position seq_pos More...
virtual bool	is_applicable (kinematics::MoveMap const &, Size intra_frame_pos, Frame const &) const
	check weather dofs can be moved More...
void	set_sequence (char const sequence)
char	sequence () const

Static Public Member Functions
static std::string	_static_type_name ()
Static Public Member Functions inherited from core::fragment::SingleResidueFragData
static std::string	_static_type_name ()

Private Types
typedef SingleResidueFragData	Parent

Private Attributes
char	secstruct_

Additional Inherited Members
Protected Attributes inherited from core::fragment::SingleResidueFragData
char	sequence_

Member Typedef Documentation

typedef SingleResidueFragData core::fragment::SecstructSRFD::Parent

private

Constructor & Destructor Documentation

core::fragment::SecstructSRFD::SecstructSRFD ( char  secstruct = 'X', char  sequence = 'X'  )

inline

Member Function Documentation

static std::string core::fragment::SecstructSRFD::_static_type_name ( )

inlinestatic

Referenced by core::fragment::FragFactory::FragFactory().

bool core::fragment::SecstructSRFD::apply ( pose::Pose &  , Size  seq_pos  ) const

overridevirtual

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

References secstruct(), and core::pose::Pose::set_secstruct().

Referenced by core::fragment::IndependentBBTorsionSRFD::apply(), and core::fragment::BBTorsionSRFD::apply().

bool core::fragment::SecstructSRFD::apply ( kinematics::MoveMap const &  , pose::Pose &  pose, Size const  seqpos  ) const

overridevirtual

apply secondary structure fragment data to the pose, movemap has no effect

Remarks

In this version of apply(), by convention MoveMap has no effect because a setting for sec.struct currently does not exist within the map.

Returns

always true

Implements core::fragment::SingleResidueFragData.

References secstruct(), and core::pose::Pose::set_secstruct().

bool core::fragment::SecstructSRFD::apply_ss ( std::string &  , Size  seq_pos  ) const

overridevirtual

insert fragment_data sec-struct into ss-string at position seq_pos

Implements core::fragment::SingleResidueFragData.

References secstruct().

SingleResidueFragDataOP core::fragment::SecstructSRFD::clone ( ) const

inlineoverridevirtual

Implements core::fragment::SingleResidueFragData.

SingleResidueFragDataOP core::fragment::SecstructSRFD::create ( ) const

inlineoverridevirtual

create a new instance of this object

Implements core::fragment::SingleResidueFragData.

bool core::fragment::SecstructSRFD::is_applicable ( kinematics::MoveMap const &  , Size  pos  ) const

overridevirtual

check whether dofs can be moved

Implements core::fragment::SingleResidueFragData.

Referenced by core::fragment::IndependentBBTorsionSRFD::is_applicable(), and core::fragment::BBTorsionSRFD::is_applicable().

bool core::fragment::SecstructSRFD::is_compatible ( SingleResidueFragData const &  ) const

overridevirtual

check weather SRFD applies to same dofs and is of same type

Implements core::fragment::SingleResidueFragData.

void core::fragment::SecstructSRFD::read_data ( std::istream &  )

overridevirtual

Default implementation: noop.

Reimplemented from core::fragment::SingleResidueFragData.

References core::pack::dunbrack::c, core::fragment::SingleResidueFragData::read_data(), secstruct_, and core::fragment::SingleResidueFragData::set_sequence().

Referenced by core::fragment::BBTorsionSRFD::read_data().

char core::fragment::SecstructSRFD::secstruct ( ) const

inlineoverridevirtual

get secstruct for this position

Reimplemented from core::fragment::SingleResidueFragData.

References secstruct_.

Referenced by apply(), apply_ss(), and show().

void core::fragment::SecstructSRFD::set_secstruct ( char const  ss )

inline

References secstruct_.

void core::fragment::SecstructSRFD::show ( std::ostream &  out ) const

overridevirtual

Reimplemented from core::fragment::SingleResidueFragData.

References secstruct(), core::fragment::SingleResidueFragData::sequence(), and core::fragment::SingleResidueFragData::show().

Referenced by core::fragment::BBTorsionSRFD::show().

bool core::fragment::SecstructSRFD::steal ( pose::Pose const &  pose, Size  seq_pos  )

overridevirtual

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

References core::pose::Pose::secstruct(), secstruct_, core::fragment::SingleResidueFragData::steal(), and core::fragment::tr().

Referenced by core::fragment::BBTorsionSRFD::steal().

std::string core::fragment::SecstructSRFD::type ( ) const

inlineoverridevirtual

Reimplemented from core::fragment::SingleResidueFragData.

Member Data Documentation

char core::fragment::SecstructSRFD::secstruct_

private

Referenced by read_data(), secstruct(), set_secstruct(), and steal().

---

The documentation for this class was generated from the following files:

• src/core/fragment/SecstructSRFD.hh
• src/core/fragment/SecstructSRFD.cc