| add_values_to_job(core::pose::Pose const &pose, protocols::jd2::Job &) const override | protocols::canonical_sampling::BiasEnergy | virtual |
| apply(core::pose::Pose &) override | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
| bias_grid_ | protocols::canonical_sampling::BiasEnergy | private |
| BiasEnergy() | protocols::canonical_sampling::BiasEnergy | |
| BiasEnergy(core::Size stride, core::Real omega, core::Real gamma) | protocols::canonical_sampling::BiasEnergy | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| count_grid_ | protocols::canonical_sampling::BiasEnergy | private |
| create() | protocols::moves::Mover | virtual |
| default_bias_ | protocols::canonical_sampling::BiasEnergy | private |
| deltaT_ | protocols::canonical_sampling::BiasEnergy | private |
| evaluate(core::pose::Pose const &) const | protocols::canonical_sampling::BiasEnergy | virtual |
| extract_collective_var(core::pose::Pose const &) const =0 | protocols::canonical_sampling::BiasEnergy | protectedpure virtual |
| finalize_simulation(core::pose::Pose &, MetropolisHastingsMover const &) override | protocols::canonical_sampling::BiasEnergy | virtual |
| fresh_instance() const | protocols::moves::Mover | virtual |
| gamma_ | protocols::canonical_sampling::BiasEnergy | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const =0 | protocols::moves::Mover | pure virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| grid_output_file_ | protocols::canonical_sampling::BiasEnergy | private |
| HistogramFloatOP typedef | protocols::canonical_sampling::BiasEnergy | private |
| HistogramIntOP typedef | protocols::canonical_sampling::BiasEnergy | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_simulation(core::pose::Pose &, MetropolisHastingsMover const &, core::Size) override | protocols::canonical_sampling::BiasEnergy | virtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| observe_after_metropolis(MetropolisHastingsMover const &) override | protocols::canonical_sampling::BiasEnergy | inlinevirtual |
| omega_ | protocols::canonical_sampling::BiasEnergy | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::canonical_sampling::BiasEnergy | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| requires_pose() | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
| reset_status() | protocols::moves::Mover | |
| restart_simulation(core::pose::Pose &, MetropolisHastingsMover &, core::Size &cycle, core::Size &temp_level, core::Real &temperature) override | protocols::canonical_sampling::BiasEnergy | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_temperature(core::Real setting) | protocols::canonical_sampling::BiasEnergy | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| step_counter_ | protocols::canonical_sampling::BiasEnergy | private |
| stride_ | protocols::canonical_sampling::BiasEnergy | private |
| Strings typedef | protocols::moves::Mover | |
| swap_replicas() | protocols::canonical_sampling::BiasEnergy | |
| TagCOP typedef | protocols::moves::Mover | |
| temperature_ | protocols::canonical_sampling::BiasEnergy | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| ThermodynamicObserver() | protocols::canonical_sampling::ThermodynamicObserver | |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| update(core::pose::Pose const &) | protocols::canonical_sampling::BiasEnergy | virtual |
| write_to_string(std::string &str) const | protocols::canonical_sampling::BiasEnergy | |
| ~BiasEnergy() override | protocols::canonical_sampling::BiasEnergy | |
| ~JobOutputterObserver()=default | protocols::jd2::JobOutputterObserver | virtual |
| ~ThermodynamicObserver() override | protocols::canonical_sampling::ThermodynamicObserver | |
1.8.7