protocols::frag_picker::quota::ABEGO_SS_Config Class Reference

read a config file for quota selector More...

#include <ABEGO_SS_Config.hh>

Inheritance diagram for protocols::frag_picker::quota::ABEGO_SS_Config:

Public Member Functions
	ABEGO_SS_Config (std::string &config_file_name)
	Constructor reads a config file. More...
core::Size	n_columns ()
core::Size	n_rows ()
core::Size	size ()
std::string &	source_file_name ()
core::Real	probability (core::Size seq_pos, core::Size bin)
core::Real	highest_probability (core::Size)
core::Size	most_probable_bin (core::Size)
utility::vector1< std::pair < core::Size, core::Size > >	get_pool_bins (core::Size pool_id)
Public Member Functions inherited from protocols::frag_picker::quota::QuotaConfig
	QuotaConfig (std::string config_file_name)
	Constructor reads a config file. More...
	QuotaConfig ()
	Constructor used by derived classes. More...
core::Size	count_pools ()
	how many pools have been defined in a config file More...
core::Real	get_fraction (core::Size pool_id)
	returns a fraction for a given pool More...
void	set_fraction (core::Size pool_id, core::Real fraction)
	returns a fraction for a given pool More...
core::Real	get_fraction (std::string pool_name)
	returns a fraction for a given pool More...
bool	is_valid_quota_pool_name (std::string &pool_name)
	returns true if a config file defined a given pool name More...
std::string &	get_pool_name (core::Size pool_id)
	return a string id (name) assigned to a given pool More...

Private Attributes
std::string	source_file_name_
utility::vector1 < utility::vector1< std::pair < core::Size, core::Size > > >	pool_defs_
utility::vector1 < utility::vector1< core::Real > >	bin_probs_

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::quota::QuotaConfig
utility::vector1< core::Real >	pool_weights_
utility::vector1< std::string >	pool_names_

Detailed Description

read a config file for quota selector

Constructor & Destructor Documentation

protocols::frag_picker::quota::ABEGO_SS_Config::ABEGO_SS_Config

(

std::string &

config_file_name

)

Constructor reads a config file.

References protocols::frag_picker::quota::abego_index(), bin_probs_, n_columns(), n_rows(), pool_defs_, protocols::frag_picker::quota::QuotaConfig::pool_names_, source_file_name_, protocols::frag_picker::quota::ss_index(), and protocols::hybridization::t.

Member Function Documentation

utility::vector1< std::pair<core::Size,core::Size> > protocols::frag_picker::quota::ABEGO_SS_Config::get_pool_bins ( core::Size  pool_id )

inline

References pool_defs_.

Referenced by protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score(), and protocols::frag_picker::FragmentPicker::set_up_ss_abego_quota().

core::Real protocols::frag_picker::quota::ABEGO_SS_Config::highest_probability

(

core::Size

pos

)

References bin_probs_, and protocols::mean_field::max().

core::Size protocols::frag_picker::quota::ABEGO_SS_Config::most_probable_bin

(

core::Size

pos

)

References bin_probs_, and protocols::mean_field::max().

core::Size protocols::frag_picker::quota::ABEGO_SS_Config::n_columns ( )

inline

References bin_probs_.

Referenced by ABEGO_SS_Config(), protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score(), and protocols::frag_picker::FragmentPicker::set_up_ss_abego_quota().

core::Size protocols::frag_picker::quota::ABEGO_SS_Config::n_rows ( )

inline

References bin_probs_.

Referenced by ABEGO_SS_Config().

core::Real protocols::frag_picker::quota::ABEGO_SS_Config::probability ( core::Size  seq_pos, core::Size  bin  )

inline

References bin_probs_.

Referenced by protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score(), and protocols::frag_picker::FragmentPicker::set_up_ss_abego_quota().

core::Size protocols::frag_picker::quota::ABEGO_SS_Config::size ( )

inline

References bin_probs_.

Referenced by protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score(), and protocols::frag_picker::FragmentPicker::set_up_ss_abego_quota().

std::string& protocols::frag_picker::quota::ABEGO_SS_Config::source_file_name ( )

inline

References source_file_name_.

Member Data Documentation

utility::vector1< utility::vector1<core::Real> > protocols::frag_picker::quota::ABEGO_SS_Config::bin_probs_

private

Referenced by ABEGO_SS_Config(), highest_probability(), most_probable_bin(), n_columns(), n_rows(), probability(), and size().

utility::vector1< utility::vector1< std::pair<core::Size,core::Size> > > protocols::frag_picker::quota::ABEGO_SS_Config::pool_defs_

private

Referenced by ABEGO_SS_Config(), and get_pool_bins().

std::string protocols::frag_picker::quota::ABEGO_SS_Config::source_file_name_

private

Referenced by ABEGO_SS_Config(), and source_file_name().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/quota/ABEGO_SS_Config.hh
• src/protocols/frag_picker/quota/ABEGO_SS_Config.cc